STRINGSTRING
fgd fgd Srot_0176 Srot_0176 Srot_0245 Srot_0245 Srot_0542 Srot_0542 Srot_0835 Srot_0835 Srot_0954 Srot_0954 fbiD fbiD Srot_1136 Srot_1136 Srot_1582 Srot_1582 Srot_2208 Srot_2208 Srot_2455 Srot_2455 Srot_2599 Srot_2599 Srot_2670 Srot_2670 Srot_2671 Srot_2671 Srot_2739 Srot_2739 Srot_2769 Srot_2769
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
fgdF420-dependent oxidoreductase, G6PDH family; Catalyzes the coenzyme F420-dependent oxidation of glucose 6- phosphate (G6P) to 6-phosphogluconolactone. (335 aa)
Srot_0176KEGG: mjl:Mjls_2657 hypothetical protein. (271 aa)
Srot_0245Putative F420-dependent enzyme; KEGG: gbr:Gbro_3771 PPOX class putative F420- dependent enzyme; TIGRFAM: putative F420-dependent enzyme; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding. (147 aa)
Srot_0542Putative F420-dependent oxidoreductase; KEGG: mab:MAB_0968c luciferase-like hypothetical protein; TIGRFAM: putative F420-dependent oxidoreductase; PFAM: Luciferase-like, subgroup. (301 aa)
Srot_0835TIGRFAM: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit; 7,8-didemethyl-8-hydroxy-5- deazariboflavin synthase, CofG subunit; PFAM: Radical SAM domain protein; KEGG: rha:RHA1_ro05944 FO synthase; SMART: Elongator protein 3/MiaB/NifB. (841 aa)
Srot_0954PFAM: protein of unknown function DUF75; KEGG: nfa:nfa37830 hypothetical protein. (313 aa)
fbiD2-phospho-L-lactate guanylyltransferase CofC; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor. (236 aa)
Srot_1136KEGG: mab:MAB_3748 putative luciferase-like oxidoreductase; TIGRFAM: putative F420-dependent oxidoreductase; PFAM: Luciferase-like, subgroup. (345 aa)
Srot_1582KEGG: msm:MSMEG_6454 hypothetical protein; TIGRFAM: putative F420-dependent oxidoreductase; PFAM: Luciferase-like, subgroup. (280 aa)
Srot_2208KEGG: nfa:nfa55380 hypothetical protein. (291 aa)
Srot_2455Putative F420-dependent enzyme; KEGG: msm:MSMEG_3380 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; TIGRFAM: putative F420-dependent enzyme; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding. (129 aa)
Srot_2599PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; KEGG: mab:MAB_3377 hypothetical protein. (262 aa)
Srot_2670LPPG domain protein containing protein; KEGG: rop:ROP_63740 LPPG--FO 2-phopspho-L-lactate transferase; TIGRFAM: LPPG domain protein containing protein; PFAM: protein of unknown function UPF0052 and CofD. (324 aa)
Srot_2671KEGG: sen:SACE_6467 F420-0--gamma-glutamyl ligase; TIGRFAM: F420 biosynthesis protein FbiB, C-terminal domain; F420-dependent oxidoreductase; PFAM: protein of unknown function DUF129; nitroreductase. (445 aa)
Srot_2739KEGG: nfa:nfa15760 hypothetical protein. (142 aa)
Srot_2769KEGG: rop:ROP_39410 putative oxidoreductase; TIGRFAM: putative F420-dependent oxidoreductase; PFAM: Luciferase-like, subgroup. (345 aa)
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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