STRINGSTRING
Srot_0770 Srot_0770 Srot_0771 Srot_0771 Srot_0772 Srot_0772 Srot_1046 Srot_1046 Srot_1047 Srot_1047 Srot_1048 Srot_1048 Srot_1049 Srot_1049 Srot_1119 Srot_1119 Srot_1120 Srot_1120 Srot_1121 Srot_1121 Srot_1122 Srot_1122 Srot_1123 Srot_1123 Srot_1124 Srot_1124 Srot_3027 Srot_3027 Srot_3028 Srot_3028 Srot_3029 Srot_3029 Srot_3030 Srot_3030 Srot_3031 Srot_3031
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Srot_0770KEGG: sma:SAV_5622 ABC transporter ATP-binding protein; PFAM: ABC transporter related; binding-protein- dependent transport systems inner membrane component; SMART: AAA ATPase. (682 aa)
Srot_0771PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV_5620 ABC transporter permease protein. (297 aa)
Srot_0772PFAM: extracellular solute-binding protein family 5; KEGG: sma:SAV_5619 ABC transporter solute-bing protein. (514 aa)
Srot_1046PFAM: extracellular solute-binding protein family 5; KEGG: rha:RHA1_ro05349 ABC oligopeptide transporter, permease component. (560 aa)
Srot_1047TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: mbt:JTY_1315 putative oligopeptide-transport ATP-binding protein ABC transporter; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (623 aa)
Srot_1048PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rop:ROP_54510 putative ABC transporter permease protein. (299 aa)
Srot_1049PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro05352 ABC oligopeptide transporter, permease component. (325 aa)
Srot_1119PFAM: extracellular solute-binding protein family 5; KEGG: mpa:MAP0409 hypothetical protein. (563 aa)
Srot_1120PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rop:ROP_42440 putative ABC transporter permease protein. (309 aa)
Srot_1121PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro04335 ABC peptide transporter, permease component. (303 aa)
Srot_1122ABC transporter related protein; KEGG: mbt:JTY_3722 putative dipeptide-transport ATP- binding protein ABC transporter; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (548 aa)
Srot_1123KEGG: mva:Mvan_5424 hypothetical protein. (234 aa)
Srot_1124PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rer:RER_14090 hypothetical protein. (388 aa)
Srot_3027KEGG: bcv:Bcav_1120 ABC transporter related; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase. (265 aa)
Srot_3028KEGG: mab:MAB_0722 putative oligopeptide ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase. (490 aa)
Srot_3029PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mab:MAB_0721 oligopeptide ABC transporter, permease protein. (382 aa)
Srot_3030PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mab:MAB_0720 oligopeptide ABC transporter, permease protein. (352 aa)
Srot_3031PFAM: extracellular solute-binding protein family 5; KEGG: mab:MAB_0719 putative oligopeptide ABC transporter, solute-binding protein. (532 aa)
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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