STRINGSTRING
Srot_2675 Srot_2675 Srot_0275 Srot_0275 Srot_0341 Srot_0341 Srot_0569 Srot_0569 Srot_0570 Srot_0570 Srot_0571 Srot_0571 Srot_0572 Srot_0572 Srot_0690 Srot_0690 Srot_1125 Srot_1125 Srot_1277 Srot_1277 Srot_1401 Srot_1401 Srot_1542 Srot_1542 Srot_1592 Srot_1592 glgC glgC Srot_1613 Srot_1613 Srot_1649 Srot_1649 Srot_1664 Srot_1664 glgE glgE glgB glgB Srot_2099 Srot_2099 Srot_2164 Srot_2164 Srot_2165 Srot_2165 Srot_2262 Srot_2262 Srot_2263 Srot_2263 Srot_2331 Srot_2331 Srot_2674 Srot_2674 Srot_2816 Srot_2816 Srot_2817 Srot_2817 Srot_2818 Srot_2818 Srot_2938 Srot_2938
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Srot_2675dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. (294 aa)
Srot_0275KEGG: mab:MAB_4907 myo-inositol-1-phosphate synthase; TIGRFAM: inositol 1-phosphate synthase; PFAM: Myo-inositol-1-phosphate synthase; Myo- inositol-1-phosphate synthase GAPDH domain protein. (364 aa)
Srot_0341PFAM: glycosyl transferase family 2; KEGG: mjl:Mjls_5373 glycosyl transferase family protein. (324 aa)
Srot_0569TIGRFAM: UDP-galactopyranose mutase; KEGG: rha:RHA1_ro04053 UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like; FAD dependent oxidoreductase. (421 aa)
Srot_0570KEGG: rer:RER_02120 galactofuranosyltransferase. (657 aa)
Srot_0571PFAM: UbiA prenyltransferase; KEGG: rha:RHA1_ro04056 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family. (307 aa)
Srot_0572KEGG: nfa:nfa1800 hypothetical protein. (622 aa)
Srot_0690PFAM: Glycosyl transferase, family 4, conserved region; KEGG: rha:RHA1_ro01480 phospho-N-acetylmuramoyl- pentapeptide-transferase. (377 aa)
Srot_1125PFAM: acyltransferase 3; KEGG: svi:Svir_23340 predicted acyltransferase. (736 aa)
Srot_1277TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; KEGG: nfa:nfa18050 putative glycosyl hydrolase; SMART: alpha amylase catalytic sub domain. (575 aa)
Srot_1401PFAM: Domain of unknown function DUF1957; glycoside hydrolase family 57; KEGG: mva:Mvan_2097 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 57 family. (522 aa)
Srot_1542PFAM: glycosyl transferase family 39; KEGG: mab:MAB_3344 glycosyl transferase. (701 aa)
Srot_1592Glycogen synthase; KEGG: rha:RHA1_ro05974 glycosyltransferase; TIGRFAM: glycogen synthase; PFAM: glycosyl transferase group 1. (388 aa)
glgCGlucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. (404 aa)
Srot_1613PFAM: glycosyl transferase family 39; KEGG: rer:RER_34740 hypothetical protein. (640 aa)
Srot_1649PFAM: Protein of unknown function DUF2029; KEGG: rop:ROP_68480 arabinosyltransferase AftC. (430 aa)
Srot_1664PFAM: glycosyl transferase family 39; KEGG: nfa:nfa53220 hypothetical protein. (655 aa)
glgEAlpha amylase catalytic sub domain protein; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB. (668 aa)
glgB1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. (739 aa)
Srot_2099KEGG: mva:Mvan_3210 hypothetical protein. (470 aa)
Srot_2164PFAM: coagulation factor 5/8 type domain protein; KEGG: rha:RHA1_ro05192 hypothetical protein. (1427 aa)
Srot_2165PFAM: acyltransferase 3; KEGG: nfa:nfa54710 putative acyltransferase. (400 aa)
Srot_2262KEGG: mva:Mvan_1364 dTDP-4-dehydrorhamnose 3,5- epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related. (199 aa)
Srot_2263Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (293 aa)
Srot_2331KEGG: rop:ROP_69820 mannosyltransferase MptB. (558 aa)
Srot_2674PFAM: glycosyl transferase family 2; KEGG: rop:ROP_63700 dTDP-rhamnose--alpha-D-N- acetylglucosamine-diphosphoryl polyprenol, alpha-3-L- rhamnosyl transferase. (307 aa)
Srot_2816PFAM: FAD linked oxidase domain protein; D- arabinono-14-lactone oxidase; KEGG: mva:Mvan_5627 FAD linked oxidase domain- containing protein. (468 aa)
Srot_2817PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rer:RER_02340 oxidoreductase. (251 aa)
Srot_2818KEGG: mjl:Mjls_5383 putative transmembrane protein. (619 aa)
Srot_2938KEGG: msm:MSMEG_5892 alpha,alpha-trehalose- phosphate synthase (UDP-forming); PFAM: glycosyl transferase family 20. (508 aa)
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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