STRINGSTRING
Srot_0130 Srot_0130 Srot_0308 Srot_0308 Srot_0309 Srot_0309 Srot_0785 Srot_0785 Srot_0786 Srot_0786 Srot_1100 Srot_1100 Srot_2377 Srot_2377 Srot_2494 Srot_2494 Srot_2495 Srot_2495 Srot_2805 Srot_2805 Srot_2806 Srot_2806 Srot_2948 Srot_2948 Srot_2949 Srot_2949
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Srot_0130KEGG: mkm:Mkms_4874 putative integral membrane protein. (438 aa)
Srot_0308KEGG: msm:MSMEG_1872 hypothetical protein; Belongs to the WXG100 family. (104 aa)
Srot_0309KEGG: nfa:nfa42700 hypothetical protein; Belongs to the WXG100 family. (99 aa)
Srot_0785KEGG: nfa:nfa42700 hypothetical protein; Belongs to the WXG100 family. (97 aa)
Srot_0786KEGG: nfa:nfa42690 hypothetical protein; Belongs to the WXG100 family. (104 aa)
Srot_1100KEGG: mav:MAV_4643 hypothetical protein. (96 aa)
Srot_2377KEGG: mjl:Mjls_1101 hypothetical protein. (522 aa)
Srot_2494PFAM: protein of unknown function DUF909; KEGG: cgt:cgR_0698 hypothetical protein; Belongs to the WXG100 family. (96 aa)
Srot_2495PFAM: protein of unknown function DUF909; KEGG: mjl:Mjls_0060 10 kDa culture filtrate antigen LHP (CFP10); Belongs to the WXG100 family. (99 aa)
Srot_2805KEGG: nfa:nfa42700 hypothetical protein; Belongs to the WXG100 family. (99 aa)
Srot_2806KEGG: mav:MAV_4831 hypothetical protein; Belongs to the WXG100 family. (104 aa)
Srot_2948PFAM: protein of unknown function DUF909; KEGG: bpu:BPUM_2860 hypothetical protein; Belongs to the WXG100 family. (99 aa)
Srot_2949KEGG: nfa:nfa42700 hypothetical protein; Belongs to the WXG100 family. (95 aa)
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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