STRINGSTRING
Srot_3048 Srot_3048 Srot_3067 Srot_3067 Srot_3064 Srot_3064 Srot_3063 Srot_3063 Srot_3055 Srot_3055 Srot_3037 Srot_3037 Srot_3012 Srot_3012 msrA msrA Srot_2958 Srot_2958 Srot_2953 Srot_2953 Srot_2949 Srot_2949 Srot_2922 Srot_2922 Srot_2919 Srot_2919 Srot_2868 Srot_2868 Srot_2861 Srot_2861 uppP uppP Srot_2840 Srot_2840 Srot_2816 Srot_2816 Srot_2814 Srot_2814 polA polA Srot_2805 Srot_2805 Srot_2801 Srot_2801 Srot_2785 Srot_2785 Srot_2781 Srot_2781 Srot_2757 Srot_2757 Srot_2745 Srot_2745 Srot_2741 Srot_2741 Srot_2732 Srot_2732 Srot_2702 Srot_2702 Srot_2701 Srot_2701 Srot_2699 Srot_2699 Srot_2698 Srot_2698 Srot_2697 Srot_2697 Srot_2695 Srot_2695 Srot_2684 Srot_2684 Srot_2647 Srot_2647 Srot_2645 Srot_2645 Srot_2639 Srot_2639 Srot_2627 Srot_2627 Srot_2624 Srot_2624 Srot_2612 Srot_2612 Srot_2600 Srot_2600 Srot_2567 Srot_2567 dinB dinB Srot_2559 Srot_2559 Srot_2545 Srot_2545 Srot_2521 Srot_2521 Srot_2516 Srot_2516 Srot_2496 Srot_2496 Srot_2494 Srot_2494 Srot_2476 Srot_2476 Srot_2472 Srot_2472 Srot_2459 Srot_2459 Srot_2457 Srot_2457 Srot_2455 Srot_2455 Srot_2438 Srot_2438 Srot_2430 Srot_2430 Srot_2428 Srot_2428 Srot_2427 Srot_2427 Srot_2422 Srot_2422 Srot_2418 Srot_2418 Srot_2405 Srot_2405 Srot_2372 Srot_2372 Srot_2371 Srot_2371 Srot_2369 Srot_2369 Srot_2366 Srot_2366 Srot_2364 Srot_2364 Srot_2335 Srot_2335 Srot_2333 Srot_2333 Srot_2332 Srot_2332 Srot_2284 Srot_2284 Srot_2276 Srot_2276 Srot_2247 Srot_2247 Srot_2222 Srot_2222 Srot_2213 Srot_2213 Srot_2212 Srot_2212 Srot_2198 Srot_2198 Srot_2197 Srot_2197 Srot_2190 Srot_2190 Srot_2189 Srot_2189 Srot_2182 Srot_2182 Srot_2146 Srot_2146 whiB-4 whiB-4 Srot_2092 Srot_2092 Srot_2060 Srot_2060 Srot_2049 Srot_2049 Srot_1990 Srot_1990 Srot_1981 Srot_1981 mca mca Srot_1967 Srot_1967 Srot_1933 Srot_1933 uvrA uvrA Srot_1845 Srot_1845 Srot_1823 Srot_1823 recO recO Srot_1811 Srot_1811 lnt lnt Srot_1726 Srot_1726 Srot_1714 Srot_1714 Srot_1713 Srot_1713 Srot_1712 Srot_1712 Srot_1711 Srot_1711 Srot_1694 Srot_1694 Srot_1686 Srot_1686 Srot_1667 Srot_1667 Srot_1666 Srot_1666 Srot_1657 Srot_1657 Srot_1656 Srot_1656 Srot_1655 Srot_1655 Srot_1648 Srot_1648 Srot_1634 Srot_1634 Srot_1633 Srot_1633 Srot_1627 Srot_1627 clpB clpB Srot_1590 Srot_1590 Srot_1584 Srot_1584 Srot_1580 Srot_1580 ligA ligA ahpD ahpD Srot_1574 Srot_1574 Srot_1566 Srot_1566 Srot_1559 Srot_1559 Srot_1543 Srot_1543 Srot_1484 Srot_1484 Srot_1468 Srot_1468 Srot_1464 Srot_1464 Srot_1462 Srot_1462 Srot_1451 Srot_1451 ruvB ruvB ruvA ruvA ruvC ruvC dnaJ-2 dnaJ-2 Srot_1436 Srot_1436 Srot_1435 Srot_1435 Srot_1405 Srot_1405 Srot_1382 Srot_1382 dnaJ dnaJ Srot_1368 Srot_1368 Srot_1356 Srot_1356 Srot_1353 Srot_1353 Srot_1315 Srot_1315 Srot_1307 Srot_1307 Srot_1306 Srot_1306 Srot_1289 Srot_1289 Srot_1288 Srot_1288 Srot_1279 Srot_1279 Srot_1263 Srot_1263 Srot_1262 Srot_1262 mfd mfd Srot_1242 Srot_1242 Srot_1239 Srot_1239 Srot_1238 Srot_1238 Srot_1233 Srot_1233 Srot_1215 Srot_1215 Srot_1195 Srot_1195 recR recR Srot_1191 Srot_1191 Srot_1173 Srot_1173 Srot_1144 Srot_1144 Srot_1132 Srot_1132 nth nth Srot_1108 Srot_1108 Srot_1107 Srot_1107 Srot_1106 Srot_1106 Srot_1100 Srot_1100 ychF ychF Srot_1076 Srot_1076 Srot_1053 Srot_1053 Srot_1012 Srot_1012 Srot_1011 Srot_1011 Srot_1005 Srot_1005 Srot_0996 Srot_0996 ung ung Srot_0986 Srot_0986 Srot_0970 Srot_0970 Srot_0964 Srot_0964 lexA lexA recA recA Srot_0928 Srot_0928 Srot_0895 Srot_0895 Srot_0872 Srot_0872 Srot_0871 Srot_0871 Srot_0870 Srot_0870 mutM mutM Srot_0835 Srot_0835 Srot_0830 Srot_0830 Srot_0824 Srot_0824 Srot_0822 Srot_0822 Srot_0785 Srot_0785 Srot_0779 Srot_0779 Srot_0763 Srot_0763 Srot_0748 Srot_0748 Srot_0739 Srot_0739 Srot_0719 Srot_0719 Srot_0707 Srot_0707 uvrB uvrB Srot_0664 Srot_0664 Srot_0658 Srot_0658 Srot_0636 Srot_0636 Srot_0622 Srot_0622 uvrC uvrC Srot_0593 Srot_0593 Srot_0578 Srot_0578 Srot_0565 Srot_0565 Srot_0564 Srot_0564 Srot_0558 Srot_0558 Srot_0554 Srot_0554 Srot_0536 Srot_0536 Srot_0529 Srot_0529 Srot_0517 Srot_0517 Srot_0516 Srot_0516 Srot_0478 Srot_0478 Srot_0472 Srot_0472 Srot_0458 Srot_0458 Srot_0445 Srot_0445 Srot_0443 Srot_0443 Srot_0441 Srot_0441 Srot_0439 Srot_0439 Srot_0432 Srot_0432 Srot_0412 Srot_0412 Srot_0386 Srot_0386 Srot_0376 Srot_0376 lysS lysS Srot_0323 Srot_0323 Srot_0309 Srot_0309 Srot_0274 Srot_0274 Srot_0245 Srot_0245 Srot_0243 Srot_0243 Srot_0212 Srot_0212 Srot_0211 Srot_0211 Srot_0196 Srot_0196 Srot_0195 Srot_0195 Srot_0192 Srot_0192 Srot_0191 Srot_0191 Srot_0184 Srot_0184 Srot_0175 Srot_0175 Srot_0166 Srot_0166 Srot_0143 Srot_0143 Srot_0127 Srot_0127 Srot_0106 Srot_0106 Srot_0100 Srot_0100 Srot_0099 Srot_0099 Srot_0032 Srot_0032 Srot_0014 Srot_0014 Srot_0012 Srot_0012 recF recF
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
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Srot_3048Putative two component transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain protein; KEGG: msm:MSMEG_5784 transcriptional regulatory protein. (247 aa)
Srot_3067KEGG: mab:MAB_4948c hypothetical protein. (224 aa)
Srot_3064Integral membrane sensor signal transduction histidine kinase; KEGG: msm:MSMEG_5663 sensor-type histidine kinase PrrB; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein. (511 aa)
Srot_3063Two component transcriptional regulator, winged helix family; KEGG: mva:Mvan_5009 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver. (238 aa)
Srot_3055Domain of unknown function DUF1794; May play a role in the intracellular transport of hydrophobic ligands. (205 aa)
Srot_3037KEGG: mbo:Mb0909 hypothetical protein. (342 aa)
Srot_3012TIGRFAM: FkbH like protein; HAD-superfamily phosphatase, subfamily IIIC; KEGG: mab:MAB_3573c HAD family phosphatase FbkH. (633 aa)
msrAPeptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (248 aa)
Srot_2958Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (203 aa)
Srot_2953Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family. (116 aa)
Srot_2949KEGG: nfa:nfa42700 hypothetical protein; Belongs to the WXG100 family. (95 aa)
Srot_2922PFAM: Phenolic acid decarboxylase; KEGG: met:M446_5254 phenolic acid decarboxylase. (170 aa)
Srot_2919PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rop:ROP_51450 adenylate cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase. (371 aa)
Srot_2868RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: mab:MAB_1248 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)
Srot_2861PFAM: DoxX family protein; KEGG: rer:RER_33030 hypothetical protein. (325 aa)
uppPBacitracin resistance protein BacA; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. (286 aa)
Srot_2840UBA/THIF-type NAD/FAD binding protein; KEGG: mpa:MAP3306c molybdopterin biosynthesis-like protein MoeZ; PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; Rhodanese domain protein; SMART: Rhodanese domain protein. (431 aa)
Srot_2816PFAM: FAD linked oxidase domain protein; D- arabinono-14-lactone oxidase; KEGG: mva:Mvan_5627 FAD linked oxidase domain- containing protein. (468 aa)
Srot_2814Response regulator receiver and ANTAR domain protein; KEGG: nfa:nfa18700 putative two-component system response regulator; PFAM: response regulator receiver; ANTAR domain protein; SMART: response regulator receiver. (242 aa)
polADNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (903 aa)
Srot_2805KEGG: nfa:nfa42700 hypothetical protein; Belongs to the WXG100 family. (99 aa)
Srot_2801Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family. (144 aa)
Srot_2785PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: gbr:Gbro_4341 ferredoxin. (395 aa)
Srot_2781TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; KEGG: rop:ROP_62990 exodeoxyribonuclease; PFAM: Endonuclease/exonuclease/phosphatase. (267 aa)
Srot_2757PFAM: aminoglycoside phosphotransferase; KEGG: mxa:MXAN_5897 phosphotransferase enzyme family protein. (351 aa)
Srot_2745Restriction endonuclease S subunits-like protein; KEGG: mgi:Mflv_0804 restriction modification system DNA specificity subunit. (449 aa)
Srot_2741PFAM: beta-lactamase; KEGG: rop:ROP_09270 hypothetical protein. (278 aa)
Srot_2732PFAM: protein of unknown function DUF520; KEGG: msm:MSMEG_1165 nucleotide-binding protein; Belongs to the UPF0234 family. (163 aa)
Srot_2702KEGG: mab:MAB_1416 putative lipoprotein LprB precursor. (207 aa)
Srot_2701Lipoprotein LprC; KEGG: rha:RHA1_ro01925 lipoprotein LprC. (176 aa)
Srot_2699PFAM: putative esterase; KEGG: rha:RHA1_ro04960 85 complex protein. (326 aa)
Srot_2698PFAM: putative esterase; KEGG: rop:ROP_50250 mycolyltransferase. (335 aa)
Srot_2697PFAM: putative esterase; KEGG: rop:ROP_50250 mycolyltransferase. (338 aa)
Srot_2695Ada metal-binding domain protein; KEGG: nfa:nfa47900 putative 3-methyladenine DNA glycosylase; PFAM: Ada metal-binding domain protein; AlkA domain protein; HhH-GPD family protein; SMART: Helix-turn-helix, AraC domain; HhH-GPD family protein. (483 aa)
Srot_2684Sulfate adenylyltransferase, large subunit; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. (545 aa)
Srot_2647PFAM: nitroreductase; KEGG: msm:MSMEG_6258 nitroreductase family protein. (200 aa)
Srot_2645PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: rop:ROP_47000 putative carboxylesterase. (331 aa)
Srot_2639PFAM: UspA domain protein; KEGG: mab:MAB_2489 hypothetical protein. (300 aa)
Srot_2627PFAM: heat shock protein Hsp20; KEGG: mab:MAB_4402 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family. (166 aa)
Srot_2624Catalase; KEGG: mmi:MMAR_5217 catalase KatE; PFAM: Catalase related subgroup; Catalase domain protein. (486 aa)
Srot_2612KEGG: rer:RER_41290 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. (389 aa)
Srot_2600Adenylate/guanylate cyclase with integral membrane sensor; KEGG: gbr:Gbro_0577 adenylyl cyclase class- 3/4/guanylyl cyclase; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein; adenylyl cyclase class-3/4/guanylyl cyclase. (516 aa)
Srot_2567PFAM: protein of unknown function DUF152; KEGG: nml:Namu_3797 protein of unknown function DUF152; Belongs to the multicopper oxidase YfiH/RL5 family. (215 aa)
dinBDNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (451 aa)
Srot_2559Catalase related subgroup; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family. (352 aa)
Srot_2545PFAM: NUDIX hydrolase; KEGG: mab:MAB_2365 MutT/NUDIX family protein. (209 aa)
Srot_2521KEGG: rop:ROP_70020 enoyl-[acyl-carrier-protein] reductase. (263 aa)
Srot_2516KEGG: mav:MAV_0719 putative esterase superfamily protein. (311 aa)
Srot_2496PFAM: PPE protein; KEGG: msm:MSMEG_0064 PPE family protein. (487 aa)
Srot_2494PFAM: protein of unknown function DUF909; KEGG: cgt:cgR_0698 hypothetical protein; Belongs to the WXG100 family. (96 aa)
Srot_2476Rieske (2Fe-2S) iron-sulfur domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: rha:RHA1_ro01810 dioxyenase. (413 aa)
Srot_2472KEGG: rer:RER_54700 aryl-alcohol dehydrogenase AdhC; TIGRFAM: mycothiol-dependent formaldehyde dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein. (361 aa)
Srot_2459KEGG: saq:Sare_3100 hypothetical protein. (159 aa)
Srot_2457PFAM: Carboxymuconolactone decarboxylase; KEGG: son:SO_0083 carboxymuconolactone decarboxylase family protein. (131 aa)
Srot_2455Putative F420-dependent enzyme; KEGG: msm:MSMEG_3380 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; TIGRFAM: putative F420-dependent enzyme; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding. (129 aa)
Srot_2438PFAM: PPE protein; KEGG: mjl:Mjls_0363 PPE protein. (492 aa)
Srot_2430KEGG: mab:MAB_2262c ABC transporter ATP-binding protein; PFAM: ABC transporter related; FAD-binding 9 siderophore-interacting domain protein; Siderophore- interacting protein; ABC transporter transmembrane region; SMART: AAA ATPase. (866 aa)
Srot_2428PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein; KEGG: msm:MSMEG_1756 endonuclease VIII and DNA N- glycosylase with an AP lyase activity. (248 aa)
Srot_2427DEAD/H associated domain protein; KEGG: mkm:Mkms_1284 DEAD/DEAH box helicase domain- containing protein; PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein. (1495 aa)
Srot_2422PFAM: monooxygenase FAD-binding; KEGG: scl:sce6695 PheA/TfdB family FAD-binding monooxygenase. (603 aa)
Srot_2418KEGG: nfa:nfa25160 putative RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein. (452 aa)
Srot_2405KEGG: kra:Krad_3638 hypothetical protein. (85 aa)
Srot_2372KEGG: mab:MAB_3890c histidine kinase response regulator; PFAM: GAF domain protein; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: GAF domain protein. (561 aa)
Srot_2371KEGG: mab:MAB_3891c LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR. (217 aa)
Srot_2369PFAM: UspA domain protein; KEGG: mab:MAB_2489 hypothetical protein. (315 aa)
Srot_2366PFAM: heat shock protein Hsp20; KEGG: sen:SACE_2438 small heat shock protein; Belongs to the small heat shock protein (HSP20) family. (135 aa)
Srot_2364KEGG: ava:Ava_C0139 transport-associated protein; PFAM: transport-associated; SMART: Transport-associated and nodulation region. (223 aa)
Srot_2335KEGG: rop:ROP_51690 hypothetical protein; TIGRFAM: DNA polymerase LigD, polymerase domain protein; PFAM: DNA primase small subunit. (337 aa)
Srot_2333PFAM: ABC-2 type transporter; KEGG: mab:MAB_2753 ABC transporter permease. (258 aa)
Srot_2332KEGG: gbr:Gbro_2380 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase. (293 aa)
Srot_2284PFAM: penicillin-binding protein transpeptidase; NTF2 domain protein transpeptidase; KEGG: rop:ROP_66260 putative penicillin-binding protein. (594 aa)
Srot_2276PFAM: OsmC family protein; KEGG: xca:xccb100_1931 hypothetical protein. (152 aa)
Srot_2247PFAM: Carboxymuconolactone decarboxylase; KEGG: rha:RHA1_ro02133 hypothetical protein. (186 aa)
Srot_2222PFAM: protein of unknown function DUF34; KEGG: rer:RER_36600 hypothetical protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. (387 aa)
Srot_2213Two component transcriptional regulator, winged helix family; KEGG: mjl:Mjls_1381 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver. (228 aa)
Srot_2212Integral membrane sensor signal transduction histidine kinase; KEGG: rha:RHA1_ro06325 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein. (555 aa)
Srot_2198RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rop:ROP_64020 RNA polymerase ECF-type sigma factor SigH; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2. (256 aa)
Srot_2197TIGRFAM: anti-sigma factor; KEGG: mpa:MAP3323c hypothetical protein. (140 aa)
Srot_2190KEGG: sma:SAV_4173 hypothetical protein. (196 aa)
Srot_2189PFAM: carbon starvation protein CstA; KEGG: mab:MAB_1260c carbon starvation protein (CstA). (752 aa)
Srot_2182Beta-lactamase; KEGG: azc:AZC_4278 beta-lactamase precursor; PFAM: beta-lactamase. (311 aa)
Srot_2146PFAM: UvrD/REP helicase; KEGG: mjl:Mjls_1463 UvrD/REP helicase. (473 aa)
whiB-4Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. (98 aa)
Srot_2092RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: mav:MAV_1365 RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily. (226 aa)
Srot_2060KEGG: rha:RHA1_ro04819 hypothetical protein. (152 aa)
Srot_2049PFAM: Mammalian cell entry related domain protein; KEGG: mab:MAB_4030 putative Mce family protein. (422 aa)
Srot_1990PFAM: protein of unknown function DUF1006; KEGG: mab:MAB_3087c hypothetical protein. (398 aa)
Srot_1981PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: rop:ROP_47000 putative carboxylesterase. (353 aa)
mcaMycothiol conjugate amidase Mca; A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl-inositol) S- conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics; Belongs to the MshB deacetylase family. Mca subfamily. (288 aa)
Srot_1967KEGG: rer:RER_24540 hypothetical protein. (350 aa)
Srot_1933PFAM: Antibiotic biosynthesis monooxygenase; KEGG: mbt:JTY_2759 hypothetical protein. (101 aa)
uvrAExcinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (954 aa)
Srot_1845Hypothetical protein; KEGG: mab:MAB_2246 thiol-specific antioxidant related protein/peroxidoxin BcpB. (218 aa)
Srot_1823PFAM: isochorismatase hydrolase; KEGG: mgi:Mflv_1089 isochorismatase hydrolase. (186 aa)
recODNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (247 aa)
Srot_1811KEGG: ami:Amir_0572 YD repeat protein. (480 aa)
lntApolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. (804 aa)
Srot_1726PFAM: monooxygenase FAD-binding; KEGG: mva:Mvan_4906 3-(3-hydroxyphenyl)propionate hydroxylase. (532 aa)
Srot_1714KEGG: mab:MAB_3891c LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR. (213 aa)
Srot_1713KEGG: nml:Namu_2005 GAF sensor signal transduction histidine kinase; PFAM: GAF domain protein; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: GAF domain protein. (534 aa)
Srot_1712PFAM: Peptidase M75, Imelysin; KEGG: cai:Caci_7481 iron permease FTR1. (368 aa)
Srot_1711KEGG: cai:Caci_7482 Dyp-type peroxidase family; TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase. (401 aa)
Srot_1694PFAM: Redoxin domain protein; KEGG: mva:Mvan_0866 redoxin domain-containing protein. (191 aa)
Srot_1686KEGG: mva:Mvan_4470 DEAD/DEAH box helicase domain- containing protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; Belongs to the DEAD box helicase family. (548 aa)
Srot_1667Two component transcriptional regulator, winged helix family; KEGG: mva:Mvan_4429 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver. (241 aa)
Srot_1666KEGG: mmc:Mmcs_3925 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein. (506 aa)
Srot_1657methylated-DNA/protein- cysteinemethyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. (180 aa)
Srot_1656RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rer:RER_52370 RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2. (166 aa)
Srot_1655methylated-DNA/protein- cysteinemethyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. (200 aa)
Srot_1648TIGRFAM: methionine-R-sulfoxide reductase; KEGG: gbr:Gbro_2267 methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B. (145 aa)
Srot_1634Two component transcriptional regulator, winged helix family; KEGG: mjl:Mjls_0654 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver. (228 aa)
Srot_1633Histidine kinase; KEGG: nfa:nfa51870 putative two-component system sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein. (413 aa)
Srot_1627KEGG: svi:Svir_18160 probable taurine catabolism dioxygenase; PFAM: Taurine catabolism dioxygenase TauD/TfdA. (313 aa)
clpBATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (852 aa)
Srot_1590TIGRFAM: DNA-3-methyladenine glycosylase I; KEGG: msm:MSMEG_5082 DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase. (199 aa)
Srot_1584KEGG: rop:ROP_19940 hypothetical membrane protein. (134 aa)
Srot_1580PFAM: DoxX family protein; KEGG: scl:sce1869 hypothetical protein. (157 aa)
ligADNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. (690 aa)
ahpDAlkylhydroperoxidase, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. (174 aa)
Srot_1574PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: nfa:nfa37890 putative alkylhydroperoxide reductase. (197 aa)
Srot_1566DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (585 aa)
Srot_1559KEGG: rha:RHA1_ro00943 3-methyladenine DNA glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); Belongs to the DNA glycosylase MPG family. (212 aa)
Srot_1543PFAM: nitroreductase; KEGG: mva:Mvan_1532 nitroreductase. (223 aa)
Srot_1484PFAM: alpha/beta hydrolase fold; KEGG: rer:RER_15910 hydrolase. (349 aa)
Srot_1468KEGG: rop:ROP_69920 putative ABC transporter ATP- binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. (542 aa)
Srot_1464PFAM: putative esterase; KEGG: mab:MAB_2451c hypothetical protein. (468 aa)
Srot_1462Radical SAM domain protein; KEGG: rer:RER_29600 hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB. (365 aa)
Srot_1451Putative F420-dependent enzyme; KEGG: mpa:MAP2229 hypothetical protein; TIGRFAM: putative F420-dependent enzyme; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding. (143 aa)
ruvBHolliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (348 aa)
ruvAHolliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (199 aa)
ruvCCrossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (189 aa)
dnaJ-2Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] (396 aa)
Srot_1436KEGG: rha:RHA1_ro06015 ABC transporter, ATP-binding component; PFAM: ABC transporter related; SMART: AAA ATPase. (317 aa)
Srot_1435KEGG: rha:RHA1_ro06014 hypothetical protein. (302 aa)
Srot_1405PFAM: GCN5-related N-acetyltransferase; KEGG: kra:Krad_3936 GCN5-related N- acetyltransferase. (174 aa)
Srot_1382KEGG: nfa:nfa14650 hypothetical protein. (213 aa)
dnaJChaperone DnaJ domain protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between [...] (386 aa)
Srot_1368KEGG: nfa:nfa8210 hypothetical protein. (274 aa)
Srot_1356KEGG: rop:ROP_18940 putative exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase. (267 aa)
Srot_1353KEGG: gbr:Gbro_0534 DNA-cytosine methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (393 aa)
Srot_1315PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: rer:RER_17020 siderophore-interacting protein. (273 aa)
Srot_1307PFAM: UMUC domain protein DNA-repair protein; KEGG: hha:Hhal_1279 DNA-directed DNA polymerase. (414 aa)
Srot_1306KEGG: mag:amb2067 SOS-response transcriptional repressors. (108 aa)
Srot_1289PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mxa:MXAN_5896 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (275 aa)
Srot_1288PFAM: alpha/beta hydrolase fold; KEGG: rop:ROP_18200 putative hydrolase. (340 aa)
Srot_1279PFAM: small multidrug resistance protein; KEGG: abb:ABBFA_001145 quaternary ammonium compound- resistance protein QacE (Quaternaryammonium determinant E). (111 aa)
Srot_1263Integral membrane sensor signal transduction histidine kinase; KEGG: rer:RER_43970 two-component histidine kinase MprB; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein. (448 aa)
Srot_1262Two component transcriptional regulator, winged helix family; KEGG: gbr:Gbro_1396 response regulator receiver; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver. (228 aa)
mfdTranscription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1214 aa)
Srot_1242PFAM: protein of unknown function DUF328; KEGG: nfa:nfa40740 hypothetical protein; Belongs to the UPF0246 family. (247 aa)
Srot_1239KEGG: rer:RER_14840 ABC transporter permease protein. (253 aa)
Srot_1238KEGG: sen:SACE_7260 putative ABC transporter ATP- binding subunit; PFAM: ABC transporter related; SMART: AAA ATPase. (346 aa)
Srot_1233PFAM: NUDIX hydrolase; KEGG: rha:RHA1_ro02192 NTP pyrophosphohydrolase. (211 aa)
Srot_1215PFAM: phosphatidylinositol 3- and 4-kinase catalytic; KEGG: mab:MAB_2111 putative phosphatidylinositol 3- and 4-kinase. (274 aa)
Srot_1195Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family. (229 aa)
recRRecombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (212 aa)
Srot_1191KEGG: kra:Krad_3638 hypothetical protein. (87 aa)
Srot_1173TIGRFAM: DNA-cytosine methyltransferase; KEGG: bgl:bglu_1g01510 DNA cytosine methyltransferase M.NgoMIII; PFAM: C-5 cytosine-specific DNA methylase. (372 aa)
Srot_1144PFAM: UspA domain protein; KEGG: mab:MAB_2312 hypothetical protein. (149 aa)
Srot_1132PFAM: protein of unknown function DUF1440; KEGG: cju:C8J_0013 putative integral membrane protein. (157 aa)
nthEndonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (245 aa)
Srot_1108PFAM: Anion-transporting ATPase; KEGG: mgi:Mflv_1368 anion-transporting ATPase. (358 aa)
Srot_1107PFAM: Anion-transporting ATPase; KEGG: rha:RHA1_ro04317 arsenate (2+)-transporting ATPase. (375 aa)
Srot_1106Glycosyl transferase family 51; KEGG: rop:ROP_42240 penicillin-binding protein 1; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; PASTA domain containing protein; SMART: PASTA domain containing protein. (807 aa)
Srot_1100KEGG: mav:MAV_4643 hypothetical protein. (96 aa)
ychFGTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (359 aa)
Srot_1076KEGG: nfa:nfa17550 hypothetical protein. (153 aa)
Srot_1053KEGG: nfa:nfa17040 hypothetical protein. (226 aa)
Srot_1012KEGG: rha:RHA1_ro01291 ComEC operon protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein. (530 aa)
Srot_1011PFAM: Soluble ligand binding domain; KEGG: mmi:MMAR_3736 membrane protein ComEA. (263 aa)
Srot_1005PFAM: major facilitator superfamily MFS_1; KEGG: rer:RER_55050 drug resistance efflux protein. (467 aa)
Srot_0996KEGG: rer:RER_24240 ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein. (764 aa)
unguracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (224 aa)
Srot_0986PFAM: NUDIX hydrolase; Phosphoglycerate mutase; KEGG: mgi:Mflv_4224 NUDIX hydrolase; Belongs to the Nudix hydrolase family. (318 aa)
Srot_0970PFAM: nucleic acid binding OB-fold tRNA/helicase- type; KEGG: rha:RHA1_ro06832 hypothetical protein. (125 aa)
Srot_0964KEGG: mjl:Mjls_2177 hypothetical protein. (210 aa)
lexATranscriptional repressor, LexA family; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (289 aa)
recArecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (346 aa)
Srot_0928PFAM: Integral membrane protein TerC; KEGG: nfa:nfa38610 putative transporter membrane protein. (347 aa)
Srot_0895KEGG: hypothetical protein. (216 aa)
Srot_0872PFAM: OsmC family protein; KEGG: mpa:MAP2992c hypothetical protein. (140 aa)
Srot_0871Two component transcriptional regulator, winged helix family; KEGG: rer:RER_37220 turgor pressure transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver. (250 aa)
Srot_0870KEGG: rer:RER_37230 turgor pressure sensor kinase; PFAM: Osmosensitive K channel His kinase sensor; UspA domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein. (856 aa)
mutMformamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (283 aa)
Srot_0835TIGRFAM: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit; 7,8-didemethyl-8-hydroxy-5- deazariboflavin synthase, CofG subunit; PFAM: Radical SAM domain protein; KEGG: rha:RHA1_ro05944 FO synthase; SMART: Elongator protein 3/MiaB/NifB. (841 aa)
Srot_0830PFAM: putative esterase; KEGG: rer:RER_14670 mycolyltransferase. (320 aa)
Srot_0824PFAM: superoxide dismutase copper/zinc binding; KEGG: rer:RER_14950 superoxide dismutase. (249 aa)
Srot_0822KEGG: gbr:Gbro_0662 hypothetical protein. (107 aa)
Srot_0785KEGG: nfa:nfa42700 hypothetical protein; Belongs to the WXG100 family. (97 aa)
Srot_0779KEGG: gbr:Gbro_0072 flavin-containing monooxygenase FMO. (505 aa)
Srot_0763PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: mjl:Mjls_3657 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen. (157 aa)
Srot_0748Secretion protein snm4; KEGG: mpa:MAP3786 hypothetical protein; TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571. (498 aa)
Srot_0739PFAM: AMP-dependent synthetase and ligase; KEGG: rop:ROP_23290 2,3-dihydroxybenzoate-AMP ligase. (505 aa)
Srot_0719KEGG: mva:Mvan_1087 DNA mismatch endonuclease vsr; TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr. (165 aa)
Srot_0707KEGG: gbr:Gbro_2971 hypothetical protein. (108 aa)
uvrBExcinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (706 aa)
Srot_0664PFAM: pentapeptide repeat protein; KEGG: scl:sce5665 hypothetical protein. (225 aa)
Srot_0658PFAM: alpha/beta hydrolase fold; KEGG: rer:RER_22170 hydrolase. (258 aa)
Srot_0636Adenylate/guanylate cyclase with integral membrane sensor; KEGG: rop:ROP_11720 adenylate cyclase; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein; adenylyl cyclase class-3/4/guanylyl cyclase. (519 aa)
Srot_0622Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family. (155 aa)
uvrCExcinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (650 aa)
Srot_0593PFAM: DoxX family protein; KEGG: ckp:ckrop_0509 hypothetical protein. (155 aa)
Srot_0578KEGG: nfa:nfa10720 hypothetical protein. (103 aa)
Srot_0565PFAM: UvrD/REP helicase; KEGG: rop:ROP_64380 putative ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily. (1062 aa)
Srot_0564PFAM: UvrD/REP helicase; KEGG: rer:RER_22180 ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily. (1025 aa)
Srot_0558PFAM: Uroporphyrinogen III synthase HEM4; transcriptional regulator domain protein; KEGG: nfa:nfa45590 bifunctional uroporphyrinogen- III synthetase/response regulator domain protein. (402 aa)
Srot_0554PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: mjl:Mjls_2593 alcohol dehydrogenase. (370 aa)
Srot_0536PFAM: DoxX family protein; KEGG: rop:ROP_57200 hypothetical membrane protein. (166 aa)
Srot_0529PFAM: TAP domain protein; alpha/beta hydrolase fold; KEGG: rha:RHA1_ro01168 proteinase. (531 aa)
Srot_0517Dyp-type peroxidase family; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family. (424 aa)
Srot_0516PFAM: Peptidase M75, Imelysin; KEGG: mva:Mvan_4774 hypothetical protein. (384 aa)
Srot_0478PFAM: Oxidoreductase FAD-binding domain protein; globin; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: mab:MAB_3133c putative flavohemoprotein; Belongs to the globin family. (400 aa)
Srot_0472PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: mab:MAB_0983c zinc-containing alcohol dehydrogenase. (379 aa)
Srot_0458PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: nfa:nfa18570 hypothetical protein. (155 aa)
Srot_0445PFAM: transcription factor CarD; KEGG: mmi:MMAR_5083 transcriptional regulatory protein. (162 aa)
Srot_0443SMART: AAA ATPase; KEGG: kra:Krad_0603 DNA repair protein RadA. (471 aa)
Srot_0441HhH-GPD family protein; KEGG: fal:FRAAL6530 A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein. (315 aa)
Srot_0439KEGG: ami:Amir_0529 deoxyribodipyrimidine photo- lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein. (444 aa)
Srot_0432Lsr2; KEGG: mjl:Mjls_5143 Lsr2. (113 aa)
Srot_0412KEGG: mab:MAB_3921c hypothetical protein. (361 aa)
Srot_0386beta-Ig-H3/fasciclin; KEGG: rer:RER_19270 hypothetical protein; PFAM: beta-Ig-H3/fasciclin; SMART: beta-Ig-H3/fasciclin. (208 aa)
Srot_0376FHA domain containing protein; KEGG: nfa:nfa850 hypothetical protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein. (157 aa)
lysSTIGRFAM: lysyl-tRNA synthetase; KEGG: rop:ROP_35510 putative lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; nucleic acid binding OB-fold tRNA/helicase-type; Belongs to the class-II aminoacyl-tRNA synthetase family. (1091 aa)
Srot_0323PFAM: Redoxin domain protein; KEGG: mav:MAV_3729 15 kDa antigen. (170 aa)
Srot_0309KEGG: nfa:nfa42700 hypothetical protein; Belongs to the WXG100 family. (99 aa)
Srot_0274KEGG: sgr:SGR_2911 putative DNA repair protein. (224 aa)
Srot_0245Putative F420-dependent enzyme; KEGG: gbr:Gbro_3771 PPOX class putative F420- dependent enzyme; TIGRFAM: putative F420-dependent enzyme; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding. (147 aa)
Srot_0243KEGG: sen:SACE_7375 hypothetical protein. (150 aa)
Srot_0212KEGG: rop:ROP_64180 hypothetical protein. (227 aa)
Srot_0211DEAD/DEAH box helicase domain protein; KEGG: rop:ROP_64170 putative ATP-dependent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; Belongs to the DEAD box helicase family. (495 aa)
Srot_0196PFAM: acyl-CoA dehydrogenase domain protein; KEGG: msm:MSMEG_0406 acyl-CoA-dehydrogenase. (611 aa)
Srot_0195PFAM: acyl-CoA dehydrogenase domain protein; KEGG: mav:MAV_4914 putative acyl-CoA dehydrogenase. (611 aa)
Srot_0192Peroxiredoxin; KEGG: mjl:Mjls_4940 glutathione peroxidase; PFAM: glutathione peroxidase; Belongs to the glutathione peroxidase family. (166 aa)
Srot_0191PFAM: Carboxymuconolactone decarboxylase; KEGG: rer:RER_15470 hypothetical protein. (180 aa)
Srot_0184Allophanate hydrolase subunit 1; KEGG: rer:RER_06990 hypothetical protein; PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1. (200 aa)
Srot_0175PFAM: nitroreductase; KEGG: dze:Dd1591_3141 nitroreductase. (226 aa)
Srot_0166KEGG: mmi:MMAR_0265 ECF subfamily RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein. (206 aa)
Srot_0143PFAM: cutinase; KEGG: mva:Mvan_1441 cutinase. (278 aa)
Srot_0127KEGG: nfa:nfa12230 putative dehydrogenase; TIGRFAM: mycothiol-dependent formaldehyde dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein. (368 aa)
Srot_0106KEGG: npu:Npun_R6310 DNA-cytosine methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase. (314 aa)
Srot_0100KEGG: mmi:MMAR_4942 two-component system response phosphate regulon transcriptional regulator, PhoP; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver. (240 aa)
Srot_0099Integral membrane sensor signal transduction histidine kinase; KEGG: rop:ROP_48340 two-component histidine kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein. (569 aa)
Srot_0032KEGG: fal:FRAAL2785 hypothetical protein. (250 aa)
Srot_0014KEGG: sen:SACE_7384 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase. (323 aa)
Srot_0012KEGG: saq:Sare_5095 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2. (202 aa)
recFDNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (401 aa)
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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