STRINGSTRING
Srot_0318 Srot_0318 Srot_3013 Srot_3013 Srot_3010 Srot_3010 Srot_3009 Srot_3009 Srot_2909 Srot_2909 Srot_2767 Srot_2767 acpP acpP Srot_2436 Srot_2436 Srot_2434 Srot_2434 Srot_2433 Srot_2433 Srot_2432 Srot_2432 Srot_2431 Srot_2431 Srot_1679 Srot_1679 Srot_1346 Srot_1346 Srot_1345 Srot_1345 Srot_1344 Srot_1344 Srot_1338 Srot_1338 Srot_1312 Srot_1312 Srot_0819 Srot_0819 Srot_0378 Srot_0378
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Srot_0318KEGG: mab:MAB_2212 polyketide synthase; PFAM: Beta-ketoacyl synthase; Acyl transferase; Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KR domain protein; phosphopantetheine-binding. (2125 aa)
Srot_3013KEGG: mab:MAB_3572c hypothetical protein. (73 aa)
Srot_3010PFAM: Beta-ketoacyl synthase; Acyl transferase; KEGG: mab:MAB_3575c polyketide synthase. (1009 aa)
Srot_3009PFAM: phosphopantetheine-binding; KEGG: mab:MAB_3576c phosphopantetheine attachment site domain-containing protein. (83 aa)
Srot_2909Thioester reductase domain protein; KEGG: mab:MAB_4714c fatty-acid-CoA ligase FadD; TIGRFAM: thioester reductase domain protein; PFAM: Male sterility domain; AMP-dependent synthetase and ligase; phosphopantetheine-binding. (1148 aa)
Srot_2767PFAM: Beta-ketoacyl synthase; phosphopantetheine- binding; Acyl transferase; Thioesterase; KEGG: rha:RHA1_ro04065 polyketide synthase. (1799 aa)
acpPPhosphopantetheine-binding protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. (128 aa)
Srot_2436Amino acid adenylation domain protein; KEGG: rop:ROP_23240 non-ribosomal peptide synthetase; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Non-ribosomal peptide synthetase. (1164 aa)
Srot_2434PFAM: condensation domain protein; AMP-dependent synthetase and ligase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KEGG: mab:MAB_2258 peptide synthetase and polyketide synthase. (1978 aa)
Srot_2433PFAM: Beta-ketoacyl synthase; Acyl transferase; Methyltransferase type 12; phosphopantetheine-binding; KEGG: mab:MAB_2257 polyketide synthase. (1680 aa)
Srot_2432PFAM: Beta-ketoacyl synthase; Thioesterase; Acyl transferase; phosphopantetheine-binding; KEGG: mab:MAB_2256 polyketide synthase. (1274 aa)
Srot_2431Amino acid adenylation domain protein; KEGG: mab:MAB_2255 non-ribosomal peptide synthetase; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding. (1079 aa)
Srot_1679Thioester reductase domain protein; KEGG: mab:MAB_4714c fatty-acid-CoA ligase FadD; TIGRFAM: thioester reductase domain protein; PFAM: Male sterility domain; AMP-dependent synthetase and ligase; phosphopantetheine-binding. (1186 aa)
Srot_1346PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; phosphopantetheine-binding; KEGG: pay:PAU_04011 similar to phosphoenolpyruvate synthase. (976 aa)
Srot_1345Amino acid adenylation domain protein; KEGG: sma:SAV_3642 non-ribosomal peptide synthetase; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding. (1025 aa)
Srot_1344KEGG: scl:sce8261 polyketide synthase type I; PFAM: Beta-ketoacyl synthase; phosphopantetheine- binding; Thioesterase. (888 aa)
Srot_1338PFAM: phosphopantetheine-binding; KEGG: sen:SACE_0021 beta keto-acyl synthase. (93 aa)
Srot_1312Amino acid adenylation domain protein; KEGG: nfa:nfa7660 putative non-ribosomal peptide synthetase; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding. (1050 aa)
Srot_0819KEGG: msm:MSMEG_6137 non-ribosomal peptide synthetase; TIGRFAM: non-ribosomal peptide synthetase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; transferase hexapeptide repeat containing protein. (1293 aa)
Srot_0378PFAM: phosphopantetheine-binding; KEGG: msm:MSMEG_2132 acyl carrier protein. (92 aa)
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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