STRINGSTRING
Srot_2540 Srot_2540 Srot_2736 Srot_2736 Srot_2767 Srot_2767 Srot_3010 Srot_3010 Srot_2433 Srot_2433 Srot_2432 Srot_2432 Srot_0318 Srot_0318
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Srot_2540PFAM: MaoC domain protein dehydratase; domain of unknown function DUF1729; Acyl transferase; Beta-ketoacyl synthase; KEGG: rha:RHA1_ro01426 fatty-acyl-CoA synthase. (3073 aa)
Srot_2736PFAM: Acyl transferase; KEGG: rha:RHA1_ro01199 [acyl-carrier protein] S- malonyltransferase. (303 aa)
Srot_2767PFAM: Beta-ketoacyl synthase; phosphopantetheine- binding; Acyl transferase; Thioesterase; KEGG: rha:RHA1_ro04065 polyketide synthase. (1799 aa)
Srot_3010PFAM: Beta-ketoacyl synthase; Acyl transferase; KEGG: mab:MAB_3575c polyketide synthase. (1009 aa)
Srot_2433PFAM: Beta-ketoacyl synthase; Acyl transferase; Methyltransferase type 12; phosphopantetheine-binding; KEGG: mab:MAB_2257 polyketide synthase. (1680 aa)
Srot_2432PFAM: Beta-ketoacyl synthase; Thioesterase; Acyl transferase; phosphopantetheine-binding; KEGG: mab:MAB_2256 polyketide synthase. (1274 aa)
Srot_0318KEGG: mab:MAB_2212 polyketide synthase; PFAM: Beta-ketoacyl synthase; Acyl transferase; Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KR domain protein; phosphopantetheine-binding. (2125 aa)
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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