STRINGSTRING
Srot_0772 Srot_0772 Srot_0832 Srot_0832 Srot_1046 Srot_1046 Srot_1119 Srot_1119 Srot_1455 Srot_1455 Srot_3031 Srot_3031
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Srot_0772PFAM: extracellular solute-binding protein family 5; KEGG: sma:SAV_5619 ABC transporter solute-bing protein. (514 aa)
Srot_0832PFAM: extracellular solute-binding protein family 5; KEGG: nfa:nfa47580 hypothetical protein. (570 aa)
Srot_1046PFAM: extracellular solute-binding protein family 5; KEGG: rha:RHA1_ro05349 ABC oligopeptide transporter, permease component. (560 aa)
Srot_1119PFAM: extracellular solute-binding protein family 5; KEGG: mpa:MAP0409 hypothetical protein. (563 aa)
Srot_1455PFAM: extracellular solute-binding protein family 5; KEGG: rop:ROP_68770 hypothetical protein. (548 aa)
Srot_3031PFAM: extracellular solute-binding protein family 5; KEGG: mab:MAB_0719 putative oligopeptide ABC transporter, solute-binding protein. (532 aa)
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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