STRINGSTRING
Srot_0273 Srot_0273 Srot_0314 Srot_0314 Srot_0320 Srot_0320 Srot_0579 Srot_0579 Srot_0804 Srot_0804 Srot_1096 Srot_1096 Srot_1335 Srot_1335 Srot_1910 Srot_1910 Srot_2014 Srot_2014 Srot_2015 Srot_2015 Srot_2079 Srot_2079 Srot_2154 Srot_2154 Srot_2155 Srot_2155 Srot_2156 Srot_2156 Srot_2157 Srot_2157 Srot_2160 Srot_2160 Srot_2410 Srot_2410 Srot_2523 Srot_2523 Srot_2536 Srot_2536 Srot_2537 Srot_2537 Srot_2824 Srot_2824
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Srot_0273TIGRFAM: glutamate decarboxylase; KEGG: rha:RHA1_ro06016 glutamate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase; Belongs to the group II decarboxylase family. (449 aa)
Srot_0314PFAM: Enoyl-CoA hydratase/isomerase; KEGG: nfa:nfa32360 enoyl-CoA hydratase. (349 aa)
Srot_0320PFAM: Aldehyde Dehydrogenase; KEGG: rha:RHA1_ro03944 succinic semialdehyde dehydrogenase. (516 aa)
Srot_0579TIGRFAM: acetyl-CoA acetyltransferase; KEGG: rer:RER_38940 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (397 aa)
Srot_0804Hypothetical protein; KEGG: cli:Clim_1716 STE24 endopeptidase. (102 aa)
Srot_1096KEGG: pgi:PG0690 4-hydroxybutyrate CoA-transferase. (429 aa)
Srot_1335KEGG: nca:Noca_3205 4-aminobutyrate aminotransferase; TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (470 aa)
Srot_1910KEGG: rha:RHA1_ro02121 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein. (292 aa)
Srot_2014KEGG: mjl:Mjls_1887 acetolactate synthase 3 regulatory subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein. (176 aa)
Srot_2015KEGG: nfa:nfa42320 acetolactate synthase 1 catalytic subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding. (622 aa)
Srot_2079PFAM: Enoyl-CoA hydratase/isomerase; KEGG: nca:Noca_0288 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (256 aa)
Srot_2154KEGG: mab:MAB_3673 succinate dehydrogenase (cytochrome b-556 subunit) SdhC; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit. (126 aa)
Srot_2155KEGG: mjl:Mjls_1255 succinate dehydrogenase subunit D. (139 aa)
Srot_2156KEGG: rha:RHA1_ro06246 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein. (585 aa)
Srot_2157KEGG: rop:ROP_63040 succinate dehydrogenase iron- sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein. (267 aa)
Srot_2160KEGG: rop:ROP_52500 acetyl-CoA acyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (449 aa)
Srot_2410PFAM: Enoyl-CoA hydratase/isomerase; KEGG: cai:Caci_4435 enoyl-CoA hydratase/isomerase. (254 aa)
Srot_2523PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: mab:MAB_0759c putative dehydrogenase (3- hydroxybutyryl-CoA dehydrogenase FadB). (286 aa)
Srot_2536PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: svi:Svir_30240 short chain enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase. (719 aa)
Srot_2537KEGG: gbr:Gbro_4504 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (402 aa)
Srot_2824PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mjl:Mjls_4812 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (242 aa)
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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