(5 nodes) Specific amino acids and opine-binding periplasmic protein, ABC transporter network (Paraburkholderia sp. CCGE1002)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ADG15215.1	TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: bpy:Bphyt_1566 cationic amino acid ABC transporter, periplasmic binding protein; SMART: extracellular solute-binding protein family 3; Belongs to the bacterial solute-binding protein 3 family. (264 aa)
	ADG17494.1	TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: bpy:Bphyt_5953 cationic amino acid ABC transporter, periplasmic binding protein; SMART: extracellular solute-binding protein family 3; Belongs to the bacterial solute-binding protein 3 family. (260 aa)
	ADG20045.1	Extracellular solute-binding protein family 3; KEGG: bpy:Bphyt_5953 cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3. (257 aa)
	ADG14899.1	TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: bph:Bphy_2163 cationic amino acid ABC transporter, periplasmic binding protein; SMART: extracellular solute-binding protein family 3. (258 aa)
	ADG20191.1	KEGG: bpy:Bphyt_2043 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3. (260 aa)

Your Current Organism:

Paraburkholderia sp. CCGE1002

NCBI taxonomy Id: 640511
Other names: P. sp. CCGE1002

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADG14899.1	ADG20045.1	BC1002_0803	BC1002_6183	TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: bph:Bphy_2163 cationic amino acid ABC transporter, periplasmic binding protein; SMART: extracellular solute-binding protein family 3.	Extracellular solute-binding protein family 3; KEGG: bpy:Bphyt_5953 cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.	0.901
ADG20045.1	ADG14899.1	BC1002_6183	BC1002_0803	Extracellular solute-binding protein family 3; KEGG: bpy:Bphyt_5953 cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.	TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: bph:Bphy_2163 cationic amino acid ABC transporter, periplasmic binding protein; SMART: extracellular solute-binding protein family 3.	0.901