(22 nodes) Axonemal microtubule, and Protein Flattop network (Helobdella robusta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1ED93_HELRO	Uncharacterized protein. (527 aa)
	T1EDM3_HELRO	Uncharacterized protein. (428 aa)
	T1EP03_HELRO	Uncharacterized protein. (200 aa)
	T1EPN3_HELRO	Uncharacterized protein. (132 aa)
	T1ERU2_HELRO	Uncharacterized protein. (253 aa)
	T1EV58_HELRO	Uncharacterized protein. (170 aa)
	T1EVD9_HELRO	Uncharacterized protein. (740 aa)
	T1EXH8_HELRO	DUF667 domain-containing protein. (191 aa)
	T1EZ80_HELRO	Uncharacterized protein. (487 aa)
	T1EZA0_HELRO	Uncharacterized protein. (170 aa)
	T1F2E4_HELRO	Uncharacterized protein. (555 aa)
	T1F2P8_HELRO	Uncharacterized protein. (553 aa)
	T1F4X6_HELRO	Uncharacterized protein. (198 aa)
	T1F8K4_HELRO	Uncharacterized protein. (202 aa)
	T1FBH0_HELRO	WD_REPEATS_REGION domain-containing protein. (610 aa)
	T1FLK7_HELRO	Uncharacterized protein. (123 aa)
	T1FPB6_HELRO	WD_REPEATS_REGION domain-containing protein. (606 aa)
	T1FSA1_HELRO	Uncharacterized protein. (529 aa)
	T1G3I7_HELRO	Uncharacterized protein. (134 aa)
	T1G627_HELRO	Enkurin domain-containing protein. (254 aa)
	T1G7C4_HELRO	Uncharacterized protein. (109 aa)
	T1G7P4_HELRO	Uncharacterized protein. (379 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1ED93_HELRO	T1EDM3_HELRO	T1ED93	T1EDM3	Uncharacterized protein.	Uncharacterized protein.	0.541
T1ED93_HELRO	T1EP03_HELRO	T1ED93	T1EP03	Uncharacterized protein.	Uncharacterized protein.	0.430
T1ED93_HELRO	T1EPN3_HELRO	T1ED93	T1EPN3	Uncharacterized protein.	Uncharacterized protein.	0.612
T1ED93_HELRO	T1ERU2_HELRO	T1ED93	T1ERU2	Uncharacterized protein.	Uncharacterized protein.	0.469
T1ED93_HELRO	T1EV58_HELRO	T1ED93	T1EV58	Uncharacterized protein.	Uncharacterized protein.	0.480
T1ED93_HELRO	T1EXH8_HELRO	T1ED93	T1EXH8	Uncharacterized protein.	DUF667 domain-containing protein.	0.552
T1ED93_HELRO	T1EZ80_HELRO	T1ED93	T1EZ80	Uncharacterized protein.	Uncharacterized protein.	0.463
T1ED93_HELRO	T1EZA0_HELRO	T1ED93	T1EZA0	Uncharacterized protein.	Uncharacterized protein.	0.484
T1ED93_HELRO	T1F2E4_HELRO	T1ED93	T1F2E4	Uncharacterized protein.	Uncharacterized protein.	0.422
T1ED93_HELRO	T1F2P8_HELRO	T1ED93	T1F2P8	Uncharacterized protein.	Uncharacterized protein.	0.469
T1ED93_HELRO	T1F4X6_HELRO	T1ED93	T1F4X6	Uncharacterized protein.	Uncharacterized protein.	0.430
T1ED93_HELRO	T1F8K4_HELRO	T1ED93	T1F8K4	Uncharacterized protein.	Uncharacterized protein.	0.496
T1ED93_HELRO	T1FBH0_HELRO	T1ED93	T1FBH0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.472
T1ED93_HELRO	T1FLK7_HELRO	T1ED93	T1FLK7	Uncharacterized protein.	Uncharacterized protein.	0.513
T1ED93_HELRO	T1FPB6_HELRO	T1ED93	T1FPB6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.472
T1ED93_HELRO	T1FSA1_HELRO	T1ED93	T1FSA1	Uncharacterized protein.	Uncharacterized protein.	0.422
T1ED93_HELRO	T1G627_HELRO	T1ED93	T1G627	Uncharacterized protein.	Enkurin domain-containing protein.	0.577
T1ED93_HELRO	T1G7C4_HELRO	T1ED93	T1G7C4	Uncharacterized protein.	Uncharacterized protein.	0.486
T1ED93_HELRO	T1G7P4_HELRO	T1ED93	T1G7P4	Uncharacterized protein.	Uncharacterized protein.	0.509
T1EDM3_HELRO	T1ED93_HELRO	T1EDM3	T1ED93	Uncharacterized protein.	Uncharacterized protein.	0.541