(12 nodes) Tubulin/FtsZ, 2-layer sandwich domain, and CaMK IV-mediated phosphorylation of CREB network (Helobdella robusta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1EHS7_HELRO	Uncharacterized protein. (597 aa)
	T1EIN0_HELRO	Doublecortin domain-containing protein. (103 aa)
	T1EJ40_HELRO	Protein kinase domain-containing protein. (319 aa)
	T1ELQ1_HELRO	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (451 aa)
	T1FK86_HELRO	Uncharacterized protein. (329 aa)
	T1FMG8_HELRO	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (450 aa)
	T1FNE3_HELRO	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (451 aa)
	T1FNQ3_HELRO	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (449 aa)
	T1FP19_HELRO	Uncharacterized protein; Belongs to the tubulin family. (441 aa)
	T1FP49_HELRO	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (449 aa)
	T1G2G9_HELRO	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (275 aa)
	T1G933_HELRO	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (450 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EHS7_HELRO	T1EIN0_HELRO	T1EHS7	T1EIN0	Uncharacterized protein.	Doublecortin domain-containing protein.	0.458
T1EHS7_HELRO	T1EJ40_HELRO	T1EHS7	T1EJ40	Uncharacterized protein.	Protein kinase domain-containing protein.	0.496
T1EHS7_HELRO	T1ELQ1_HELRO	T1EHS7	T1ELQ1	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.748
T1EHS7_HELRO	T1FK86_HELRO	T1EHS7	T1FK86	Uncharacterized protein.	Uncharacterized protein.	0.458
T1EHS7_HELRO	T1FMG8_HELRO	T1EHS7	T1FMG8	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.779
T1EHS7_HELRO	T1FNE3_HELRO	T1EHS7	T1FNE3	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.779
T1EHS7_HELRO	T1FNQ3_HELRO	T1EHS7	T1FNQ3	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.748
T1EHS7_HELRO	T1FP19_HELRO	T1EHS7	T1FP19	Uncharacterized protein.	Uncharacterized protein; Belongs to the tubulin family.	0.748
T1EHS7_HELRO	T1FP49_HELRO	T1EHS7	T1FP49	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.748
T1EHS7_HELRO	T1G2G9_HELRO	T1EHS7	T1G2G9	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.495
T1EHS7_HELRO	T1G933_HELRO	T1EHS7	T1G933	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.779
T1EIN0_HELRO	T1EHS7_HELRO	T1EIN0	T1EHS7	Doublecortin domain-containing protein.	Uncharacterized protein.	0.458
T1EIN0_HELRO	T1EJ40_HELRO	T1EIN0	T1EJ40	Doublecortin domain-containing protein.	Protein kinase domain-containing protein.	0.458
T1EIN0_HELRO	T1ELQ1_HELRO	T1EIN0	T1ELQ1	Doublecortin domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.748
T1EIN0_HELRO	T1FK86_HELRO	T1EIN0	T1FK86	Doublecortin domain-containing protein.	Uncharacterized protein.	0.489
T1EIN0_HELRO	T1FMG8_HELRO	T1EIN0	T1FMG8	Doublecortin domain-containing protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.779
T1EIN0_HELRO	T1FNE3_HELRO	T1EIN0	T1FNE3	Doublecortin domain-containing protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.779
T1EIN0_HELRO	T1FNQ3_HELRO	T1EIN0	T1FNQ3	Doublecortin domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.748
T1EIN0_HELRO	T1FP19_HELRO	T1EIN0	T1FP19	Doublecortin domain-containing protein.	Uncharacterized protein; Belongs to the tubulin family.	0.748
T1EIN0_HELRO	T1FP49_HELRO	T1EIN0	T1FP49	Doublecortin domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.748