10 items (Helobdella robusta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1EEW7_HELRO	LID domain-containing protein. (318 aa)
	T1EH46_HELRO	Uncharacterized protein. (139 aa)
	T1EM33_HELRO	LisH domain-containing protein. (368 aa)
	T1FQH6_HELRO	LID domain-containing protein. (540 aa)
	T1FYG8_HELRO	Uncharacterized protein. (113 aa)
	T1FZF1_HELRO	Uncharacterized protein. (126 aa)
	T1G1C8_HELRO	Uncharacterized protein. (369 aa)
	T1G2U8_HELRO	Uncharacterized protein. (350 aa)
	T1G354_HELRO	Uncharacterized protein. (154 aa)
	T1G4D4_HELRO	BHLH domain-containing protein. (87 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EEW7_HELRO	T1EH46_HELRO	T1EEW7	T1EH46	LID domain-containing protein.	Uncharacterized protein.	0.803
T1EEW7_HELRO	T1EM33_HELRO	T1EEW7	T1EM33	LID domain-containing protein.	LisH domain-containing protein.	0.880
T1EEW7_HELRO	T1FYG8_HELRO	T1EEW7	T1FYG8	LID domain-containing protein.	Uncharacterized protein.	0.526
T1EEW7_HELRO	T1FZF1_HELRO	T1EEW7	T1FZF1	LID domain-containing protein.	Uncharacterized protein.	0.525
T1EEW7_HELRO	T1G1C8_HELRO	T1EEW7	T1G1C8	LID domain-containing protein.	Uncharacterized protein.	0.768
T1EEW7_HELRO	T1G2U8_HELRO	T1EEW7	T1G2U8	LID domain-containing protein.	Uncharacterized protein.	0.803
T1EEW7_HELRO	T1G354_HELRO	T1EEW7	T1G354	LID domain-containing protein.	Uncharacterized protein.	0.803
T1EEW7_HELRO	T1G4D4_HELRO	T1EEW7	T1G4D4	LID domain-containing protein.	BHLH domain-containing protein.	0.895
T1EH46_HELRO	T1EEW7_HELRO	T1EH46	T1EEW7	Uncharacterized protein.	LID domain-containing protein.	0.803
T1EH46_HELRO	T1EM33_HELRO	T1EH46	T1EM33	Uncharacterized protein.	LisH domain-containing protein.	0.427
T1EH46_HELRO	T1FQH6_HELRO	T1EH46	T1FQH6	Uncharacterized protein.	LID domain-containing protein.	0.803
T1EH46_HELRO	T1FYG8_HELRO	T1EH46	T1FYG8	Uncharacterized protein.	Uncharacterized protein.	0.466
T1EH46_HELRO	T1FZF1_HELRO	T1EH46	T1FZF1	Uncharacterized protein.	Uncharacterized protein.	0.441
T1EH46_HELRO	T1G4D4_HELRO	T1EH46	T1G4D4	Uncharacterized protein.	BHLH domain-containing protein.	0.696
T1EM33_HELRO	T1EEW7_HELRO	T1EM33	T1EEW7	LisH domain-containing protein.	LID domain-containing protein.	0.880
T1EM33_HELRO	T1EH46_HELRO	T1EM33	T1EH46	LisH domain-containing protein.	Uncharacterized protein.	0.427
T1EM33_HELRO	T1FQH6_HELRO	T1EM33	T1FQH6	LisH domain-containing protein.	LID domain-containing protein.	0.880
T1EM33_HELRO	T1G1C8_HELRO	T1EM33	T1G1C8	LisH domain-containing protein.	Uncharacterized protein.	0.518
T1EM33_HELRO	T1G2U8_HELRO	T1EM33	T1G2U8	LisH domain-containing protein.	Uncharacterized protein.	0.427
T1EM33_HELRO	T1G354_HELRO	T1EM33	T1G354	LisH domain-containing protein.	Uncharacterized protein.	0.427