(10 nodes) Organellar large ribosomal subunit, and Ribosomal protein S17/S11 network (Helobdella robusta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1ELU0_HELRO	Uncharacterized protein. (143 aa)
	T1ERY8_HELRO	Uncharacterized protein. (142 aa)
	T1F830_HELRO	Uncharacterized protein. (126 aa)
	T1FFX1_HELRO	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (155 aa)
	T1FN68_HELRO	Ribosomal_L18_c domain-containing protein. (301 aa)
	T1FX98_HELRO	Uncharacterized protein. (163 aa)
	T1FXM5_HELRO	Uncharacterized protein. (215 aa)
	T1G5H8_HELRO	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (232 aa)
	T1G653_HELRO	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (63 aa)
	T1G7X7_HELRO	Uncharacterized protein. (145 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1ELU0_HELRO	T1ERY8_HELRO	T1ELU0	T1ERY8	Uncharacterized protein.	Uncharacterized protein.	0.999
T1ELU0_HELRO	T1F830_HELRO	T1ELU0	T1F830	Uncharacterized protein.	Uncharacterized protein.	0.999
T1ELU0_HELRO	T1FFX1_HELRO	T1ELU0	T1FFX1	Uncharacterized protein.	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.999
T1ELU0_HELRO	T1FN68_HELRO	T1ELU0	T1FN68	Uncharacterized protein.	Ribosomal_L18_c domain-containing protein.	0.999
T1ELU0_HELRO	T1FX98_HELRO	T1ELU0	T1FX98	Uncharacterized protein.	Uncharacterized protein.	0.999
T1ELU0_HELRO	T1FXM5_HELRO	T1ELU0	T1FXM5	Uncharacterized protein.	Uncharacterized protein.	0.999
T1ELU0_HELRO	T1G5H8_HELRO	T1ELU0	T1G5H8	Uncharacterized protein.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.999
T1ELU0_HELRO	T1G653_HELRO	T1ELU0	T1G653	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.999
T1ELU0_HELRO	T1G7X7_HELRO	T1ELU0	T1G7X7	Uncharacterized protein.	Uncharacterized protein.	0.999
T1ERY8_HELRO	T1ELU0_HELRO	T1ERY8	T1ELU0	Uncharacterized protein.	Uncharacterized protein.	0.999
T1ERY8_HELRO	T1F830_HELRO	T1ERY8	T1F830	Uncharacterized protein.	Uncharacterized protein.	0.999
T1ERY8_HELRO	T1FFX1_HELRO	T1ERY8	T1FFX1	Uncharacterized protein.	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.999
T1ERY8_HELRO	T1FN68_HELRO	T1ERY8	T1FN68	Uncharacterized protein.	Ribosomal_L18_c domain-containing protein.	0.999
T1ERY8_HELRO	T1FX98_HELRO	T1ERY8	T1FX98	Uncharacterized protein.	Uncharacterized protein.	0.999
T1ERY8_HELRO	T1FXM5_HELRO	T1ERY8	T1FXM5	Uncharacterized protein.	Uncharacterized protein.	0.999
T1ERY8_HELRO	T1G5H8_HELRO	T1ERY8	T1G5H8	Uncharacterized protein.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.999
T1ERY8_HELRO	T1G653_HELRO	T1ERY8	T1G653	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.999
T1ERY8_HELRO	T1G7X7_HELRO	T1ERY8	T1G7X7	Uncharacterized protein.	Uncharacterized protein.	0.999
T1F830_HELRO	T1ELU0_HELRO	T1F830	T1ELU0	Uncharacterized protein.	Uncharacterized protein.	0.999
T1F830_HELRO	T1ERY8_HELRO	T1F830	T1ERY8	Uncharacterized protein.	Uncharacterized protein.	0.999