(12 nodes) CEBP, ZZ domain superfamily, and PAP/25A-associated network (Helobdella robusta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1EFD6_HELRO	Uncharacterized protein. (339 aa)
	T1EU12_HELRO	CSD_1 domain-containing protein. (180 aa)
	T1F6Y9_HELRO	Uncharacterized protein. (568 aa)
	T1FCY6_HELRO	CCHC-type domain-containing protein. (869 aa)
	T1FQN3_HELRO	Uncharacterized protein. (485 aa)
	T1FSG5_HELRO	PAP-associated domain-containing protein. (336 aa)
	T1FW89_HELRO	PAP-associated domain-containing protein. (701 aa)
	T1FY03_HELRO	LSM14 domain-containing protein. (95 aa)
	T1FYS7_HELRO	Uncharacterized protein. (408 aa)
	T1FZP8_HELRO	Uncharacterized protein. (293 aa)
	T1G3W2_HELRO	Uncharacterized protein. (290 aa)
	T1G906_HELRO	Uncharacterized protein. (403 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EFD6_HELRO	T1F6Y9_HELRO	T1EFD6	T1F6Y9	Uncharacterized protein.	Uncharacterized protein.	0.595
T1EFD6_HELRO	T1FW89_HELRO	T1EFD6	T1FW89	Uncharacterized protein.	PAP-associated domain-containing protein.	0.403
T1EFD6_HELRO	T1FY03_HELRO	T1EFD6	T1FY03	Uncharacterized protein.	LSM14 domain-containing protein.	0.595
T1EFD6_HELRO	T1FYS7_HELRO	T1EFD6	T1FYS7	Uncharacterized protein.	Uncharacterized protein.	0.638
T1EFD6_HELRO	T1FZP8_HELRO	T1EFD6	T1FZP8	Uncharacterized protein.	Uncharacterized protein.	0.547
T1EFD6_HELRO	T1G3W2_HELRO	T1EFD6	T1G3W2	Uncharacterized protein.	Uncharacterized protein.	0.547
T1EFD6_HELRO	T1G906_HELRO	T1EFD6	T1G906	Uncharacterized protein.	Uncharacterized protein.	0.595
T1EU12_HELRO	T1FCY6_HELRO	T1EU12	T1FCY6	CSD_1 domain-containing protein.	CCHC-type domain-containing protein.	0.437
T1EU12_HELRO	T1FSG5_HELRO	T1EU12	T1FSG5	CSD_1 domain-containing protein.	PAP-associated domain-containing protein.	0.437
T1EU12_HELRO	T1FW89_HELRO	T1EU12	T1FW89	CSD_1 domain-containing protein.	PAP-associated domain-containing protein.	0.437
T1F6Y9_HELRO	T1EFD6_HELRO	T1F6Y9	T1EFD6	Uncharacterized protein.	Uncharacterized protein.	0.595
T1F6Y9_HELRO	T1FY03_HELRO	T1F6Y9	T1FY03	Uncharacterized protein.	LSM14 domain-containing protein.	0.546
T1F6Y9_HELRO	T1FYS7_HELRO	T1F6Y9	T1FYS7	Uncharacterized protein.	Uncharacterized protein.	0.691
T1F6Y9_HELRO	T1FZP8_HELRO	T1F6Y9	T1FZP8	Uncharacterized protein.	Uncharacterized protein.	0.595
T1F6Y9_HELRO	T1G3W2_HELRO	T1F6Y9	T1G3W2	Uncharacterized protein.	Uncharacterized protein.	0.595
T1F6Y9_HELRO	T1G906_HELRO	T1F6Y9	T1G906	Uncharacterized protein.	Uncharacterized protein.	0.588
T1FCY6_HELRO	T1EU12_HELRO	T1FCY6	T1EU12	CCHC-type domain-containing protein.	CSD_1 domain-containing protein.	0.437
T1FSG5_HELRO	T1EU12_HELRO	T1FSG5	T1EU12	PAP-associated domain-containing protein.	CSD_1 domain-containing protein.	0.437
T1FW89_HELRO	T1EFD6_HELRO	T1FW89	T1EFD6	PAP-associated domain-containing protein.	Uncharacterized protein.	0.403
T1FW89_HELRO	T1EU12_HELRO	T1FW89	T1EU12	PAP-associated domain-containing protein.	CSD_1 domain-containing protein.	0.437