(16 nodes) EPM2A-interacting protein 1/ZBED8-like network (Helobdella robusta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1EH67_HELRO	Uncharacterized protein. (136 aa)
	T1EH68_HELRO	Uncharacterized protein. (151 aa)
	T1ETE3_HELRO	Uncharacterized protein. (127 aa)
	T1EVY0_HELRO	OTU domain-containing protein. (276 aa)
	T1F634_HELRO	Uncharacterized protein. (201 aa)
	T1FDZ2_HELRO	Uncharacterized protein. (161 aa)
	T1FFF1_HELRO	Uncharacterized protein. (254 aa)
	T1FI27_HELRO	Uncharacterized protein. (102 aa)
	T1FX97_HELRO	Uncharacterized protein. (151 aa)
	T1FYM8_HELRO	Uncharacterized protein. (231 aa)
	T1FZV1_HELRO	Uncharacterized protein. (105 aa)
	T1G0R9_HELRO	Uncharacterized protein. (156 aa)
	T1G1P0_HELRO	Uncharacterized protein. (152 aa)
	T1G501_HELRO	Uncharacterized protein. (162 aa)
	T1G6Q9_HELRO	Dimer_Tnp_hAT domain-containing protein. (103 aa)
	T1G894_HELRO	Dimer_Tnp_hAT domain-containing protein. (103 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EH67_HELRO	T1FYM8_HELRO	T1EH67	T1FYM8	Uncharacterized protein.	Uncharacterized protein.	0.453
T1EH67_HELRO	T1G501_HELRO	T1EH67	T1G501	Uncharacterized protein.	Uncharacterized protein.	0.482
T1EH68_HELRO	T1F634_HELRO	T1EH68	T1F634	Uncharacterized protein.	Uncharacterized protein.	0.426
T1EH68_HELRO	T1FFF1_HELRO	T1EH68	T1FFF1	Uncharacterized protein.	Uncharacterized protein.	0.412
T1EH68_HELRO	T1FYM8_HELRO	T1EH68	T1FYM8	Uncharacterized protein.	Uncharacterized protein.	0.457
T1EH68_HELRO	T1G1P0_HELRO	T1EH68	T1G1P0	Uncharacterized protein.	Uncharacterized protein.	0.424
T1EH68_HELRO	T1G501_HELRO	T1EH68	T1G501	Uncharacterized protein.	Uncharacterized protein.	0.479
T1F634_HELRO	T1EH68_HELRO	T1F634	T1EH68	Uncharacterized protein.	Uncharacterized protein.	0.426
T1F634_HELRO	T1FI27_HELRO	T1F634	T1FI27	Uncharacterized protein.	Uncharacterized protein.	0.417
T1F634_HELRO	T1FX97_HELRO	T1F634	T1FX97	Uncharacterized protein.	Uncharacterized protein.	0.404
T1FDZ2_HELRO	T1FI27_HELRO	T1FDZ2	T1FI27	Uncharacterized protein.	Uncharacterized protein.	0.422
T1FDZ2_HELRO	T1G501_HELRO	T1FDZ2	T1G501	Uncharacterized protein.	Uncharacterized protein.	0.427
T1FFF1_HELRO	T1EH68_HELRO	T1FFF1	T1EH68	Uncharacterized protein.	Uncharacterized protein.	0.412
T1FFF1_HELRO	T1FI27_HELRO	T1FFF1	T1FI27	Uncharacterized protein.	Uncharacterized protein.	0.414
T1FI27_HELRO	T1F634_HELRO	T1FI27	T1F634	Uncharacterized protein.	Uncharacterized protein.	0.417
T1FI27_HELRO	T1FDZ2_HELRO	T1FI27	T1FDZ2	Uncharacterized protein.	Uncharacterized protein.	0.422
T1FI27_HELRO	T1FFF1_HELRO	T1FI27	T1FFF1	Uncharacterized protein.	Uncharacterized protein.	0.414
T1FI27_HELRO	T1FYM8_HELRO	T1FI27	T1FYM8	Uncharacterized protein.	Uncharacterized protein.	0.400
T1FI27_HELRO	T1G1P0_HELRO	T1FI27	T1G1P0	Uncharacterized protein.	Uncharacterized protein.	0.409
T1FI27_HELRO	T1G501_HELRO	T1FI27	T1G501	Uncharacterized protein.	Uncharacterized protein.	0.436