(11 nodes) Enolase, and Propionate catabolic process network (Helobdella robusta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1EE02_HELRO	Uncharacterized protein. (635 aa)
	T1EEQ7_HELRO	Uncharacterized protein. (630 aa)
	T1EFL7_HELRO	Pyruvate kinase; Belongs to the pyruvate kinase family. (579 aa)
	T1ELZ8_HELRO	Uncharacterized protein. (642 aa)
	T1EM15_HELRO	Pyruvate kinase; Belongs to the pyruvate kinase family. (503 aa)
	T1EMD3_HELRO	Uncharacterized protein. (453 aa)
	T1ER33_HELRO	Enolase_C domain-containing protein. (555 aa)
	T1FD06_HELRO	Uncharacterized protein. (435 aa)
	T1FM52_HELRO	Uncharacterized protein. (436 aa)
	T1G3A5_HELRO	Pyruvate kinase; Belongs to the pyruvate kinase family. (546 aa)
	T1G6X6_HELRO	Uncharacterized protein. (645 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EE02_HELRO	T1EEQ7_HELRO	T1EE02	T1EEQ7	Uncharacterized protein.	Uncharacterized protein.	0.803
T1EE02_HELRO	T1EFL7_HELRO	T1EE02	T1EFL7	Uncharacterized protein.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.920
T1EE02_HELRO	T1ELZ8_HELRO	T1EE02	T1ELZ8	Uncharacterized protein.	Uncharacterized protein.	0.806
T1EE02_HELRO	T1EM15_HELRO	T1EE02	T1EM15	Uncharacterized protein.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.920
T1EE02_HELRO	T1EMD3_HELRO	T1EE02	T1EMD3	Uncharacterized protein.	Uncharacterized protein.	0.948
T1EE02_HELRO	T1ER33_HELRO	T1EE02	T1ER33	Uncharacterized protein.	Enolase_C domain-containing protein.	0.948
T1EE02_HELRO	T1FD06_HELRO	T1EE02	T1FD06	Uncharacterized protein.	Uncharacterized protein.	0.948
T1EE02_HELRO	T1FM52_HELRO	T1EE02	T1FM52	Uncharacterized protein.	Uncharacterized protein.	0.948
T1EE02_HELRO	T1G3A5_HELRO	T1EE02	T1G3A5	Uncharacterized protein.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.920
T1EE02_HELRO	T1G6X6_HELRO	T1EE02	T1G6X6	Uncharacterized protein.	Uncharacterized protein.	0.803
T1EEQ7_HELRO	T1EE02_HELRO	T1EEQ7	T1EE02	Uncharacterized protein.	Uncharacterized protein.	0.803
T1EEQ7_HELRO	T1EFL7_HELRO	T1EEQ7	T1EFL7	Uncharacterized protein.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.920
T1EEQ7_HELRO	T1ELZ8_HELRO	T1EEQ7	T1ELZ8	Uncharacterized protein.	Uncharacterized protein.	0.805
T1EEQ7_HELRO	T1EM15_HELRO	T1EEQ7	T1EM15	Uncharacterized protein.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.920
T1EEQ7_HELRO	T1EMD3_HELRO	T1EEQ7	T1EMD3	Uncharacterized protein.	Uncharacterized protein.	0.948
T1EEQ7_HELRO	T1ER33_HELRO	T1EEQ7	T1ER33	Uncharacterized protein.	Enolase_C domain-containing protein.	0.948
T1EEQ7_HELRO	T1FD06_HELRO	T1EEQ7	T1FD06	Uncharacterized protein.	Uncharacterized protein.	0.948
T1EEQ7_HELRO	T1FM52_HELRO	T1EEQ7	T1FM52	Uncharacterized protein.	Uncharacterized protein.	0.948
T1EEQ7_HELRO	T1G3A5_HELRO	T1EEQ7	T1G3A5	Uncharacterized protein.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.920
T1EEQ7_HELRO	T1G6X6_HELRO	T1EEQ7	T1G6X6	Uncharacterized protein.	Uncharacterized protein.	0.803