32 items (Helobdella robusta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1FI82_HELRO	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (336 aa)
	T1F8A9_HELRO	Uncharacterized protein. (136 aa)
	T1F744_HELRO	Uncharacterized protein. (193 aa)
	T1F2T1_HELRO	Uncharacterized protein. (153 aa)
	T1EVL9_HELRO	Exonuclease domain-containing protein. (122 aa)
	T1EQG7_HELRO	Uncharacterized protein. (216 aa)
	T1ENQ2_HELRO	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (727 aa)
	T1ENL0_HELRO	NUC194 domain-containing protein. (1382 aa)
	T1ENF4_HELRO	Uncharacterized protein. (311 aa)
	T1EHY8_HELRO	Uncharacterized protein. (275 aa)
	T1EH64_HELRO	Uncharacterized protein. (145 aa)
	T1EGF1_HELRO	S1 motif domain-containing protein. (305 aa)
	T1EFR7_HELRO	Exonuclease domain-containing protein. (373 aa)
	T1EFN0_HELRO	HRDC domain-containing protein. (570 aa)
	T1EEF6_HELRO	Uncharacterized protein. (296 aa)
	T1EEB4_HELRO	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (467 aa)
	T1G9A1_HELRO	Uncharacterized protein. (955 aa)
	T1G7L8_HELRO	KH_dom_type_1 domain-containing protein. (228 aa)
	T1G7L2_HELRO	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (636 aa)
	T1G402_HELRO	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (301 aa)
	T1G2A6_HELRO	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (243 aa)
	T1FXL9_HELRO	Protein MAK16 homolog; Belongs to the MAK16 family. (242 aa)
	T1FWY9_HELRO	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (694 aa)
	T1FWA7_HELRO	Uncharacterized protein. (2165 aa)
	T1FVA3_HELRO	Exonuclease domain-containing protein. (621 aa)
	T1FTF7_HELRO	Uncharacterized protein. (1305 aa)
	T1FQ56_HELRO	Uncharacterized protein. (555 aa)
	T1FPG4_HELRO	Uncharacterized protein. (274 aa)
	T1FN92_HELRO	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (543 aa)
	T1FN70_HELRO	Uncharacterized protein. (260 aa)
	T1FMG1_HELRO	Brix domain-containing protein. (306 aa)
	T1FKE4_HELRO	CLP1_P domain-containing protein. (742 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EEB4_HELRO	T1EEF6_HELRO	T1EEB4	T1EEF6	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	Uncharacterized protein.	0.628
T1EEB4_HELRO	T1ENF4_HELRO	T1EEB4	T1ENF4	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	Uncharacterized protein.	0.827
T1EEB4_HELRO	T1ENQ2_HELRO	T1EEB4	T1ENQ2	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	0.993
T1EEB4_HELRO	T1FI82_HELRO	T1EEB4	T1FI82	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.891
T1EEB4_HELRO	T1FKE4_HELRO	T1EEB4	T1FKE4	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	CLP1_P domain-containing protein.	0.788
T1EEB4_HELRO	T1FMG1_HELRO	T1EEB4	T1FMG1	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	Brix domain-containing protein.	0.991
T1EEB4_HELRO	T1FN70_HELRO	T1EEB4	T1FN70	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	Uncharacterized protein.	0.993
T1EEB4_HELRO	T1FN92_HELRO	T1EEB4	T1FN92	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.999
T1EEB4_HELRO	T1FQ56_HELRO	T1EEB4	T1FQ56	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	Uncharacterized protein.	0.977
T1EEB4_HELRO	T1FTF7_HELRO	T1EEB4	T1FTF7	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	Uncharacterized protein.	0.511
T1EEB4_HELRO	T1FWA7_HELRO	T1EEB4	T1FWA7	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	Uncharacterized protein.	0.977
T1EEB4_HELRO	T1FXL9_HELRO	T1EEB4	T1FXL9	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.995
T1EEB4_HELRO	T1G2A6_HELRO	T1EEB4	T1G2A6	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	0.988
T1EEB4_HELRO	T1G402_HELRO	T1EEB4	T1G402	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.891
T1EEB4_HELRO	T1G7L2_HELRO	T1EEB4	T1G7L2	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.984
T1EEB4_HELRO	T1G9A1_HELRO	T1EEB4	T1G9A1	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	Uncharacterized protein.	0.670
T1EEF6_HELRO	T1EEB4_HELRO	T1EEF6	T1EEB4	Uncharacterized protein.	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	0.628
T1EEF6_HELRO	T1EFN0_HELRO	T1EEF6	T1EFN0	Uncharacterized protein.	HRDC domain-containing protein.	0.999
T1EEF6_HELRO	T1EGF1_HELRO	T1EEF6	T1EGF1	Uncharacterized protein.	S1 motif domain-containing protein.	0.999
T1EEF6_HELRO	T1EHY8_HELRO	T1EEF6	T1EHY8	Uncharacterized protein.	Uncharacterized protein.	0.999