18 items (Helobdella robusta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1EF80_HELRO	PLD phosphodiesterase domain-containing protein. (222 aa)
	T1EGD4_HELRO	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (1414 aa)
	T1G9Q8_HELRO	Uncharacterized protein. (905 aa)
	T1FWY5_HELRO	Uncharacterized protein. (1777 aa)
	T1G7L8_HELRO	KH_dom_type_1 domain-containing protein. (228 aa)
	T1G762_HELRO	RNase_PH domain-containing protein. (211 aa)
	T1G5Z3_HELRO	Uncharacterized protein. (148 aa)
	T1G4M1_HELRO	Uncharacterized protein. (288 aa)
	T1G0L8_HELRO	PPM-type phosphatase domain-containing protein. (323 aa)
	T1FZU7_HELRO	Uncharacterized protein; Belongs to the MT-A70-like family. (242 aa)
	T1FYT3_HELRO	Tet_JBP domain-containing protein. (323 aa)
	T1FXW7_HELRO	MTS domain-containing protein. (215 aa)
	T1EP55_HELRO	C3H1-type domain-containing protein. (1156 aa)
	T1ESZ0_HELRO	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (725 aa)
	T1F816_HELRO	Tudor domain-containing protein. (458 aa)
	T1F9M4_HELRO	DUF3715 domain-containing protein. (532 aa)
	T1FMC0_HELRO	Fe2OG dioxygenase domain-containing protein. (292 aa)
	T1FNJ2_HELRO	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. (303 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EF80_HELRO	T1F816_HELRO	T1EF80	T1F816	PLD phosphodiesterase domain-containing protein.	Tudor domain-containing protein.	0.582
T1EGD4_HELRO	T1ESZ0_HELRO	T1EGD4	T1ESZ0	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.948
T1EGD4_HELRO	T1FXW7_HELRO	T1EGD4	T1FXW7	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	MTS domain-containing protein.	0.452
T1EGD4_HELRO	T1FYT3_HELRO	T1EGD4	T1FYT3	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	Tet_JBP domain-containing protein.	0.555
T1EGD4_HELRO	T1G4M1_HELRO	T1EGD4	T1G4M1	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	Uncharacterized protein.	0.725
T1EGD4_HELRO	T1G9Q8_HELRO	T1EGD4	T1G9Q8	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	Uncharacterized protein.	0.423
T1EP55_HELRO	T1F816_HELRO	T1EP55	T1F816	C3H1-type domain-containing protein.	Tudor domain-containing protein.	0.422
T1EP55_HELRO	T1G9Q8_HELRO	T1EP55	T1G9Q8	C3H1-type domain-containing protein.	Uncharacterized protein.	0.450
T1ESZ0_HELRO	T1EGD4_HELRO	T1ESZ0	T1EGD4	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.948
T1ESZ0_HELRO	T1G4M1_HELRO	T1ESZ0	T1G4M1	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	Uncharacterized protein.	0.454
T1ESZ0_HELRO	T1G9Q8_HELRO	T1ESZ0	T1G9Q8	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	Uncharacterized protein.	0.616
T1F816_HELRO	T1EF80_HELRO	T1F816	T1EF80	Tudor domain-containing protein.	PLD phosphodiesterase domain-containing protein.	0.582
T1F816_HELRO	T1EP55_HELRO	T1F816	T1EP55	Tudor domain-containing protein.	C3H1-type domain-containing protein.	0.422
T1FMC0_HELRO	T1FXW7_HELRO	T1FMC0	T1FXW7	Fe2OG dioxygenase domain-containing protein.	MTS domain-containing protein.	0.562
T1FMC0_HELRO	T1FZU7_HELRO	T1FMC0	T1FZU7	Fe2OG dioxygenase domain-containing protein.	Uncharacterized protein; Belongs to the MT-A70-like family.	0.543
T1FXW7_HELRO	T1EGD4_HELRO	T1FXW7	T1EGD4	MTS domain-containing protein.	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.452
T1FXW7_HELRO	T1FMC0_HELRO	T1FXW7	T1FMC0	MTS domain-containing protein.	Fe2OG dioxygenase domain-containing protein.	0.562
T1FXW7_HELRO	T1FZU7_HELRO	T1FXW7	T1FZU7	MTS domain-containing protein.	Uncharacterized protein; Belongs to the MT-A70-like family.	0.624
T1FYT3_HELRO	T1EGD4_HELRO	T1FYT3	T1EGD4	Tet_JBP domain-containing protein.	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.555
T1FZU7_HELRO	T1FMC0_HELRO	T1FZU7	T1FMC0	Uncharacterized protein; Belongs to the MT-A70-like family.	Fe2OG dioxygenase domain-containing protein.	0.543