31 items (Helobdella robusta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1ED60_HELRO	Uncharacterized protein. (906 aa)
	T1EDE0_HELRO	Uncharacterized protein. (629 aa)
	T1EEF6_HELRO	Uncharacterized protein. (296 aa)
	T1EF63_HELRO	Bin3-type SAM domain-containing protein. (289 aa)
	T1EF76_HELRO	Bin3-type SAM domain-containing protein. (594 aa)
	T1EFN0_HELRO	HRDC domain-containing protein. (570 aa)
	T1EFX7_HELRO	PUA domain-containing protein. (472 aa)
	T1EGF1_HELRO	S1 motif domain-containing protein. (305 aa)
	T1EHY8_HELRO	Uncharacterized protein. (275 aa)
	T1EII0_HELRO	Uncharacterized protein. (121 aa)
	T1EQB3_HELRO	Uncharacterized protein. (1119 aa)
	T1EQG7_HELRO	Uncharacterized protein. (216 aa)
	T1ES31_HELRO	Uncharacterized protein. (265 aa)
	T1F471_HELRO	RTR1-type domain-containing protein. (288 aa)
	T1FF74_HELRO	Uncharacterized protein. (1374 aa)
	T1FI38_HELRO	Uncharacterized protein. (1063 aa)
	T1FIQ3_HELRO	DUF3677 domain-containing protein. (2529 aa)
	T1FP30_HELRO	C3H1-type domain-containing protein. (546 aa)
	T1FQD5_HELRO	Beta-Casp domain-containing protein. (428 aa)
	T1FRX1_HELRO	Uncharacterized protein. (1005 aa)
	T1FS81_HELRO	RTR1-type domain-containing protein. (471 aa)
	T1FSZ7_HELRO	Uncharacterized protein. (1009 aa)
	T1FT70_HELRO	Uncharacterized protein. (750 aa)
	T1FZU7_HELRO	Uncharacterized protein; Belongs to the MT-A70-like family. (242 aa)
	T1G2R1_HELRO	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (222 aa)
	T1G720_HELRO	PHD domain-containing protein. (56 aa)
	T1G762_HELRO	RNase_PH domain-containing protein. (211 aa)
	T1G7E0_HELRO	Uncharacterized protein. (64 aa)
	T1G7L8_HELRO	KH_dom_type_1 domain-containing protein. (228 aa)
	T1G982_HELRO	Uncharacterized protein. (243 aa)
	T1G9D0_HELRO	VWFA domain-containing protein. (1013 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1ED60_HELRO	T1EDE0_HELRO	T1ED60	T1EDE0	Uncharacterized protein.	Uncharacterized protein.	0.999
T1ED60_HELRO	T1EQB3_HELRO	T1ED60	T1EQB3	Uncharacterized protein.	Uncharacterized protein.	0.997
T1ED60_HELRO	T1ES31_HELRO	T1ED60	T1ES31	Uncharacterized protein.	Uncharacterized protein.	0.990
T1ED60_HELRO	T1F471_HELRO	T1ED60	T1F471	Uncharacterized protein.	RTR1-type domain-containing protein.	0.616
T1ED60_HELRO	T1FIQ3_HELRO	T1ED60	T1FIQ3	Uncharacterized protein.	DUF3677 domain-containing protein.	0.999
T1ED60_HELRO	T1FQD5_HELRO	T1ED60	T1FQD5	Uncharacterized protein.	Beta-Casp domain-containing protein.	0.990
T1ED60_HELRO	T1FRX1_HELRO	T1ED60	T1FRX1	Uncharacterized protein.	Uncharacterized protein.	0.997
T1ED60_HELRO	T1FS81_HELRO	T1ED60	T1FS81	Uncharacterized protein.	RTR1-type domain-containing protein.	0.616
T1ED60_HELRO	T1G720_HELRO	T1ED60	T1G720	Uncharacterized protein.	PHD domain-containing protein.	0.982
T1ED60_HELRO	T1G9D0_HELRO	T1ED60	T1G9D0	Uncharacterized protein.	VWFA domain-containing protein.	0.994
T1EDE0_HELRO	T1ED60_HELRO	T1EDE0	T1ED60	Uncharacterized protein.	Uncharacterized protein.	0.999
T1EDE0_HELRO	T1EQB3_HELRO	T1EDE0	T1EQB3	Uncharacterized protein.	Uncharacterized protein.	0.991
T1EDE0_HELRO	T1ES31_HELRO	T1EDE0	T1ES31	Uncharacterized protein.	Uncharacterized protein.	0.972
T1EDE0_HELRO	T1F471_HELRO	T1EDE0	T1F471	Uncharacterized protein.	RTR1-type domain-containing protein.	0.605
T1EDE0_HELRO	T1FIQ3_HELRO	T1EDE0	T1FIQ3	Uncharacterized protein.	DUF3677 domain-containing protein.	0.999
T1EDE0_HELRO	T1FQD5_HELRO	T1EDE0	T1FQD5	Uncharacterized protein.	Beta-Casp domain-containing protein.	0.972
T1EDE0_HELRO	T1FRX1_HELRO	T1EDE0	T1FRX1	Uncharacterized protein.	Uncharacterized protein.	0.994
T1EDE0_HELRO	T1FS81_HELRO	T1EDE0	T1FS81	Uncharacterized protein.	RTR1-type domain-containing protein.	0.605
T1EDE0_HELRO	T1G720_HELRO	T1EDE0	T1G720	Uncharacterized protein.	PHD domain-containing protein.	0.968
T1EDE0_HELRO	T1G9D0_HELRO	T1EDE0	T1G9D0	Uncharacterized protein.	VWFA domain-containing protein.	0.989