(8 nodes) Somatic cell DNA recombination network (Helobdella robusta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1G7L8_HELRO	KH_dom_type_1 domain-containing protein. (228 aa)
	T1EIQ8_HELRO	Uncharacterized protein. (95 aa)
	T1ENL0_HELRO	NUC194 domain-containing protein. (1382 aa)
	T1FF58_HELRO	Uncharacterized protein. (301 aa)
	T1FWY9_HELRO	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (694 aa)
	T1FXE8_HELRO	Uncharacterized protein. (184 aa)
	T1G253_HELRO	DNA ligase. (802 aa)
	T1G6M8_HELRO	DUF3342 domain-containing protein. (138 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EIQ8_HELRO	T1G253_HELRO	T1EIQ8	T1G253	Uncharacterized protein.	DNA ligase.	0.682
T1ENL0_HELRO	T1FWY9_HELRO	T1ENL0	T1FWY9	NUC194 domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.946
T1ENL0_HELRO	T1G253_HELRO	T1ENL0	T1G253	NUC194 domain-containing protein.	DNA ligase.	0.900
T1FWY9_HELRO	T1ENL0_HELRO	T1FWY9	T1ENL0	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	NUC194 domain-containing protein.	0.946
T1FWY9_HELRO	T1G253_HELRO	T1FWY9	T1G253	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	DNA ligase.	0.900
T1FXE8_HELRO	T1G253_HELRO	T1FXE8	T1G253	Uncharacterized protein.	DNA ligase.	0.802
T1G253_HELRO	T1EIQ8_HELRO	T1G253	T1EIQ8	DNA ligase.	Uncharacterized protein.	0.682
T1G253_HELRO	T1ENL0_HELRO	T1G253	T1ENL0	DNA ligase.	NUC194 domain-containing protein.	0.900
T1G253_HELRO	T1FWY9_HELRO	T1G253	T1FWY9	DNA ligase.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.900
T1G253_HELRO	T1FXE8_HELRO	T1G253	T1FXE8	DNA ligase.	Uncharacterized protein.	0.802