29 items (Helobdella robusta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1ED94_HELRO	Uncharacterized protein. (205 aa)
	T1EDH0_HELRO	AA_TRNA_LIGASE_II domain-containing protein. (572 aa)
	T1EE02_HELRO	Uncharacterized protein. (635 aa)
	T1EEQ7_HELRO	Uncharacterized protein. (630 aa)
	T1EEV7_HELRO	AMP-binding domain-containing protein. (634 aa)
	T1EG13_HELRO	Uncharacterized protein. (213 aa)
	T1EGN6_HELRO	Uncharacterized protein; Belongs to the protein kinase superfamily. (431 aa)
	T1EI27_HELRO	LNS2 domain-containing protein. (195 aa)
	T1EIC8_HELRO	Recep_L_domain domain-containing protein. (152 aa)
	T1EIG8_HELRO	SH2 domain-containing protein. (94 aa)
	T1EIM1_HELRO	SH2 domain-containing protein. (108 aa)
	T1EK27_HELRO	Uncharacterized protein. (55 aa)
	T1EK42_HELRO	Uncharacterized protein. (73 aa)
	T1EK64_HELRO	BHLH domain-containing protein. (64 aa)
	T1EKM6_HELRO	Protein kinase domain-containing protein. (141 aa)
	T1ELM3_HELRO	Protein kinase domain-containing protein. (239 aa)
	T1ELZ8_HELRO	Uncharacterized protein. (642 aa)
	T1EMJ5_HELRO	Aminotran_1_2 domain-containing protein. (378 aa)
	T1ET11_HELRO	WD_REPEATS_REGION domain-containing protein. (118 aa)
	T1ET12_HELRO	Uncharacterized protein. (382 aa)
	T1F4S2_HELRO	PH domain-containing protein. (323 aa)
	T1FQL0_HELRO	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (370 aa)
	T1FXD8_HELRO	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (305 aa)
	T1G0S5_HELRO	WD_REPEATS_REGION domain-containing protein. (646 aa)
	T1G2G0_HELRO	SH2 domain-containing protein. (122 aa)
	T1G3F3_HELRO	Uncharacterized protein. (1546 aa)
	T1G6X6_HELRO	Uncharacterized protein. (645 aa)
	T1G839_HELRO	Protein kinase domain-containing protein. (231 aa)
	T1G9J2_HELRO	C2 domain-containing protein. (1051 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EDH0_HELRO	T1EEV7_HELRO	T1EDH0	T1EEV7	AA_TRNA_LIGASE_II domain-containing protein.	AMP-binding domain-containing protein.	0.419
T1EDH0_HELRO	T1G3F3_HELRO	T1EDH0	T1G3F3	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein.	0.999
T1EE02_HELRO	T1EEQ7_HELRO	T1EE02	T1EEQ7	Uncharacterized protein.	Uncharacterized protein.	0.803
T1EE02_HELRO	T1ELZ8_HELRO	T1EE02	T1ELZ8	Uncharacterized protein.	Uncharacterized protein.	0.806
T1EE02_HELRO	T1EMJ5_HELRO	T1EE02	T1EMJ5	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.823
T1EE02_HELRO	T1G6X6_HELRO	T1EE02	T1G6X6	Uncharacterized protein.	Uncharacterized protein.	0.803
T1EEQ7_HELRO	T1EE02_HELRO	T1EEQ7	T1EE02	Uncharacterized protein.	Uncharacterized protein.	0.803
T1EEQ7_HELRO	T1ELZ8_HELRO	T1EEQ7	T1ELZ8	Uncharacterized protein.	Uncharacterized protein.	0.805
T1EEQ7_HELRO	T1EMJ5_HELRO	T1EEQ7	T1EMJ5	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.823
T1EEQ7_HELRO	T1G6X6_HELRO	T1EEQ7	T1G6X6	Uncharacterized protein.	Uncharacterized protein.	0.803
T1EEV7_HELRO	T1EDH0_HELRO	T1EEV7	T1EDH0	AMP-binding domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.419
T1EEV7_HELRO	T1G3F3_HELRO	T1EEV7	T1G3F3	AMP-binding domain-containing protein.	Uncharacterized protein.	0.419
T1EGN6_HELRO	T1EIG8_HELRO	T1EGN6	T1EIG8	Uncharacterized protein; Belongs to the protein kinase superfamily.	SH2 domain-containing protein.	0.698
T1EGN6_HELRO	T1EIM1_HELRO	T1EGN6	T1EIM1	Uncharacterized protein; Belongs to the protein kinase superfamily.	SH2 domain-containing protein.	0.698
T1EGN6_HELRO	T1EK27_HELRO	T1EGN6	T1EK27	Uncharacterized protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.428
T1EGN6_HELRO	T1EK42_HELRO	T1EGN6	T1EK42	Uncharacterized protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.428
T1EGN6_HELRO	T1F4S2_HELRO	T1EGN6	T1F4S2	Uncharacterized protein; Belongs to the protein kinase superfamily.	PH domain-containing protein.	0.665
T1EGN6_HELRO	T1FQL0_HELRO	T1EGN6	T1FQL0	Uncharacterized protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.992
T1EGN6_HELRO	T1FXD8_HELRO	T1EGN6	T1FXD8	Uncharacterized protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.992
T1EGN6_HELRO	T1G2G0_HELRO	T1EGN6	T1G2G0	Uncharacterized protein; Belongs to the protein kinase superfamily.	SH2 domain-containing protein.	0.698