(7 nodes) Sarcoplasmic reticulum membrane network (Helobdella robusta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1FRM4_HELRO	Uncharacterized protein. (1663 aa)
	T1G8Q7_HELRO	RR_TM4-6 domain-containing protein. (161 aa)
	T1G0R3_HELRO	Uncharacterized protein. (1734 aa)
	T1G0J6_HELRO	Uncharacterized protein. (1018 aa)
	T1FWJ9_HELRO	PID domain-containing protein. (634 aa)
	T1EE53_HELRO	Receptor expression-enhancing protein. (216 aa)
	T1EDK6_HELRO	Receptor expression-enhancing protein. (179 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1FRM4_HELRO	T1G0J6_HELRO	T1FRM4	T1G0J6	Uncharacterized protein.	Uncharacterized protein.	0.937
T1FRM4_HELRO	T1G8Q7_HELRO	T1FRM4	T1G8Q7	Uncharacterized protein.	RR_TM4-6 domain-containing protein.	0.695
T1G0J6_HELRO	T1FRM4_HELRO	T1G0J6	T1FRM4	Uncharacterized protein.	Uncharacterized protein.	0.937
T1G0J6_HELRO	T1G0R3_HELRO	T1G0J6	T1G0R3	Uncharacterized protein.	Uncharacterized protein.	0.922
T1G0J6_HELRO	T1G8Q7_HELRO	T1G0J6	T1G8Q7	Uncharacterized protein.	RR_TM4-6 domain-containing protein.	0.937
T1G0R3_HELRO	T1G0J6_HELRO	T1G0R3	T1G0J6	Uncharacterized protein.	Uncharacterized protein.	0.922
T1G0R3_HELRO	T1G8Q7_HELRO	T1G0R3	T1G8Q7	Uncharacterized protein.	RR_TM4-6 domain-containing protein.	0.940
T1G8Q7_HELRO	T1FRM4_HELRO	T1G8Q7	T1FRM4	RR_TM4-6 domain-containing protein.	Uncharacterized protein.	0.695
T1G8Q7_HELRO	T1G0J6_HELRO	T1G8Q7	T1G0J6	RR_TM4-6 domain-containing protein.	Uncharacterized protein.	0.937
T1G8Q7_HELRO	T1G0R3_HELRO	T1G8Q7	T1G0R3	RR_TM4-6 domain-containing protein.	Uncharacterized protein.	0.940