(15 nodes) Segmentation network (Helobdella robusta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1FZP7_HELRO	Uncharacterized protein. (108 aa)
	T1FZW7_HELRO	WD_REPEATS_REGION domain-containing protein. (505 aa)
	T1G0V8_HELRO	Uncharacterized protein. (263 aa)
	T1G527_HELRO	Homeobox domain-containing protein. (62 aa)
	T1G909_HELRO	RRM domain-containing protein. (411 aa)
	T1FS90_HELRO	DUF3715 domain-containing protein. (1187 aa)
	T1FRL0_HELRO	RRM domain-containing protein. (526 aa)
	T1FSU6_HELRO	Uncharacterized protein. (1021 aa)
	T1FWP9_HELRO	RRM domain-containing protein. (455 aa)
	T1EF80_HELRO	PLD phosphodiesterase domain-containing protein. (222 aa)
	T1EZU1_HELRO	Uncharacterized protein. (1312 aa)
	T1F2M6_HELRO	Uncharacterized protein. (290 aa)
	T1F3Z4_HELRO	Uncharacterized protein. (1468 aa)
	T1F816_HELRO	Tudor domain-containing protein. (458 aa)
	T1FQ43_HELRO	Uncharacterized protein. (1816 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EF80_HELRO	T1F3Z4_HELRO	T1EF80	T1F3Z4	PLD phosphodiesterase domain-containing protein.	Uncharacterized protein.	0.460
T1EF80_HELRO	T1F816_HELRO	T1EF80	T1F816	PLD phosphodiesterase domain-containing protein.	Tudor domain-containing protein.	0.582
T1EF80_HELRO	T1FQ43_HELRO	T1EF80	T1FQ43	PLD phosphodiesterase domain-containing protein.	Uncharacterized protein.	0.643
T1F3Z4_HELRO	T1EF80_HELRO	T1F3Z4	T1EF80	Uncharacterized protein.	PLD phosphodiesterase domain-containing protein.	0.460
T1F3Z4_HELRO	T1F816_HELRO	T1F3Z4	T1F816	Uncharacterized protein.	Tudor domain-containing protein.	0.645
T1F816_HELRO	T1EF80_HELRO	T1F816	T1EF80	Tudor domain-containing protein.	PLD phosphodiesterase domain-containing protein.	0.582
T1F816_HELRO	T1F3Z4_HELRO	T1F816	T1F3Z4	Tudor domain-containing protein.	Uncharacterized protein.	0.645
T1FQ43_HELRO	T1EF80_HELRO	T1FQ43	T1EF80	Uncharacterized protein.	PLD phosphodiesterase domain-containing protein.	0.643