(13 nodes) TOR complex network (Helobdella robusta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1EE16_HELRO	WD_REPEATS_REGION domain-containing protein. (325 aa)
	T1ES35_HELRO	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2193 aa)
	T1ET40_HELRO	Uncharacterized protein. (157 aa)
	T1ETC8_HELRO	Uncharacterized protein. (110 aa)
	T1EW48_HELRO	Uncharacterized protein. (119 aa)
	T1EYM9_HELRO	Uncharacterized protein. (159 aa)
	T1EYN1_HELRO	Uncharacterized protein. (198 aa)
	T1F5E0_HELRO	Uncharacterized protein. (599 aa)
	T1F5E1_HELRO	RICTOR_N domain-containing protein. (237 aa)
	T1F5E2_HELRO	RICTOR_N domain-containing protein. (274 aa)
	T1F7R5_HELRO	Uncharacterized protein. (394 aa)
	T1FVT8_HELRO	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (3852 aa)
	T1G0Q6_HELRO	Raptor_N domain-containing protein. (401 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EE16_HELRO	T1ES35_HELRO	T1EE16	T1ES35	WD_REPEATS_REGION domain-containing protein.	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	0.999
T1EE16_HELRO	T1ET40_HELRO	T1EE16	T1ET40	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.848
T1EE16_HELRO	T1ETC8_HELRO	T1EE16	T1ETC8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.848
T1EE16_HELRO	T1EW48_HELRO	T1EE16	T1EW48	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.848
T1EE16_HELRO	T1EYM9_HELRO	T1EE16	T1EYM9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.986
T1EE16_HELRO	T1EYN1_HELRO	T1EE16	T1EYN1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.848
T1EE16_HELRO	T1F5E0_HELRO	T1EE16	T1F5E0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.965
T1EE16_HELRO	T1F5E1_HELRO	T1EE16	T1F5E1	WD_REPEATS_REGION domain-containing protein.	RICTOR_N domain-containing protein.	0.976
T1EE16_HELRO	T1F5E2_HELRO	T1EE16	T1F5E2	WD_REPEATS_REGION domain-containing protein.	RICTOR_N domain-containing protein.	0.967
T1EE16_HELRO	T1F7R5_HELRO	T1EE16	T1F7R5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.697
T1EE16_HELRO	T1FVT8_HELRO	T1EE16	T1FVT8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.910
T1EE16_HELRO	T1G0Q6_HELRO	T1EE16	T1G0Q6	WD_REPEATS_REGION domain-containing protein.	Raptor_N domain-containing protein.	0.986
T1ES35_HELRO	T1EE16_HELRO	T1ES35	T1EE16	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	WD_REPEATS_REGION domain-containing protein.	0.999
T1ES35_HELRO	T1ET40_HELRO	T1ES35	T1ET40	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.709
T1ES35_HELRO	T1ETC8_HELRO	T1ES35	T1ETC8	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.709
T1ES35_HELRO	T1EW48_HELRO	T1ES35	T1EW48	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.709
T1ES35_HELRO	T1EYM9_HELRO	T1ES35	T1EYM9	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.989
T1ES35_HELRO	T1EYN1_HELRO	T1ES35	T1EYN1	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.709
T1ES35_HELRO	T1F5E0_HELRO	T1ES35	T1F5E0	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.888
T1ES35_HELRO	T1F5E1_HELRO	T1ES35	T1F5E1	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	RICTOR_N domain-containing protein.	0.955