(28 nodes) Negative regulation of cell motility network (Helobdella robusta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1EQN1_HELRO	Uncharacterized protein. (1390 aa)
	T1EQ00_HELRO	Uncharacterized protein. (741 aa)
	T1F6R0_HELRO	Uncharacterized protein. (143 aa)
	T1EXA1_HELRO	Uncharacterized protein. (481 aa)
	T1FAN6_HELRO	Uncharacterized protein. (448 aa)
	T1FG77_HELRO	ANK_REP_REGION domain-containing protein. (704 aa)
	T1FM11_HELRO	Uncharacterized protein. (125 aa)
	T1FQF3_HELRO	Uncharacterized protein. (388 aa)
	T1FT29_HELRO	Uncharacterized protein. (1076 aa)
	T1FT76_HELRO	Uncharacterized protein. (1344 aa)
	T1FUX3_HELRO	Uncharacterized protein. (701 aa)
	T1FW34_HELRO	Uncharacterized protein. (676 aa)
	T1FWP1_HELRO	C2H2-type domain-containing protein. (777 aa)
	T1FXM8_HELRO	PX domain-containing protein. (449 aa)
	T1FYJ7_HELRO	C2 NT-type domain-containing protein. (176 aa)
	T1EKH2_HELRO	Uncharacterized protein. (272 aa)
	T1EIZ7_HELRO	Uncharacterized protein. (579 aa)
	T1EIL1_HELRO	TGF_BETA_2 domain-containing protein. (103 aa)
	T1EGG7_HELRO	Uncharacterized protein. (752 aa)
	T1EG39_HELRO	Uncharacterized protein. (613 aa)
	T1EEC8_HELRO	UDENN FLCN/SMCR8-type domain-containing protein. (597 aa)
	T1FYX9_HELRO	Uncharacterized protein. (107 aa)
	T1FZ06_HELRO	BRO1 domain-containing protein. (548 aa)
	T1G3K0_HELRO	Uncharacterized protein. (841 aa)
	T1G3Q4_HELRO	Uncharacterized protein. (279 aa)
	T1G4J6_HELRO	Uncharacterized protein. (482 aa)
	T1G527_HELRO	Homeobox domain-containing protein. (62 aa)
	T1G8K6_HELRO	Uncharacterized protein. (212 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EQN1_HELRO	T1EXA1_HELRO	T1EQN1	T1EXA1	Uncharacterized protein.	Uncharacterized protein.	0.637
T1EQN1_HELRO	T1FUX3_HELRO	T1EQN1	T1FUX3	Uncharacterized protein.	Uncharacterized protein.	0.637
T1EXA1_HELRO	T1EQN1_HELRO	T1EXA1	T1EQN1	Uncharacterized protein.	Uncharacterized protein.	0.637
T1EXA1_HELRO	T1FT29_HELRO	T1EXA1	T1FT29	Uncharacterized protein.	Uncharacterized protein.	0.637
T1EXA1_HELRO	T1FW34_HELRO	T1EXA1	T1FW34	Uncharacterized protein.	Uncharacterized protein.	0.637
T1F6R0_HELRO	T1FG77_HELRO	T1F6R0	T1FG77	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.970
T1FG77_HELRO	T1F6R0_HELRO	T1FG77	T1F6R0	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.970
T1FT29_HELRO	T1EXA1_HELRO	T1FT29	T1EXA1	Uncharacterized protein.	Uncharacterized protein.	0.637
T1FT29_HELRO	T1FUX3_HELRO	T1FT29	T1FUX3	Uncharacterized protein.	Uncharacterized protein.	0.637
T1FUX3_HELRO	T1EQN1_HELRO	T1FUX3	T1EQN1	Uncharacterized protein.	Uncharacterized protein.	0.637
T1FUX3_HELRO	T1FT29_HELRO	T1FUX3	T1FT29	Uncharacterized protein.	Uncharacterized protein.	0.637
T1FUX3_HELRO	T1FW34_HELRO	T1FUX3	T1FW34	Uncharacterized protein.	Uncharacterized protein.	0.637
T1FW34_HELRO	T1EXA1_HELRO	T1FW34	T1EXA1	Uncharacterized protein.	Uncharacterized protein.	0.637
T1FW34_HELRO	T1FUX3_HELRO	T1FW34	T1FUX3	Uncharacterized protein.	Uncharacterized protein.	0.637