26 items (Helobdella robusta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1G909_HELRO	RRM domain-containing protein. (411 aa)
	T1ED14_HELRO	Suf domain-containing protein. (844 aa)
	T1EDD5_HELRO	Uncharacterized protein. (2131 aa)
	T1EDM8_HELRO	SKIP_SNW domain-containing protein. (549 aa)
	T1EDY3_HELRO	Tr-type G domain-containing protein. (977 aa)
	T1EED4_HELRO	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (329 aa)
	T1EEE3_HELRO	Uncharacterized protein. (633 aa)
	T1EEY8_HELRO	Uncharacterized protein. (1547 aa)
	T1EFC9_HELRO	Uncharacterized protein. (313 aa)
	T1EIZ3_HELRO	C3H1-type domain-containing protein. (229 aa)
	T1FAI0_HELRO	WD_REPEATS_REGION domain-containing protein. (531 aa)
	T1FDJ0_HELRO	WD_REPEATS_REGION domain-containing protein. (231 aa)
	T1FDJ1_HELRO	WD_REPEATS_REGION domain-containing protein. (315 aa)
	T1FJW8_HELRO	Uncharacterized protein. (914 aa)
	T1FN91_HELRO	WD_REPEATS_REGION domain-containing protein. (349 aa)
	T1FNA5_HELRO	Uncharacterized protein. (676 aa)
	T1FRL0_HELRO	RRM domain-containing protein. (526 aa)
	T1FWP9_HELRO	RRM domain-containing protein. (455 aa)
	T1FYI9_HELRO	Uncharacterized protein. (360 aa)
	T1FZD9_HELRO	Cwf21 domain-containing protein. (192 aa)
	T1G2N8_HELRO	Protein kinase domain-containing protein. (359 aa)
	T1G4D1_HELRO	Uncharacterized protein. (221 aa)
	T1G7L0_HELRO	WD_REPEATS_REGION domain-containing protein. (311 aa)
	T1G8Y5_HELRO	WD_REPEATS_REGION domain-containing protein. (569 aa)
	T1G8Z9_HELRO	Uncharacterized protein. (493 aa)
	T1G973_HELRO	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (169 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1ED14_HELRO	T1EDD5_HELRO	T1ED14	T1EDD5	Suf domain-containing protein.	Uncharacterized protein.	0.917
T1ED14_HELRO	T1EDM8_HELRO	T1ED14	T1EDM8	Suf domain-containing protein.	SKIP_SNW domain-containing protein.	0.999
T1ED14_HELRO	T1EDY3_HELRO	T1ED14	T1EDY3	Suf domain-containing protein.	Tr-type G domain-containing protein.	0.998
T1ED14_HELRO	T1EED4_HELRO	T1ED14	T1EED4	Suf domain-containing protein.	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.	0.999
T1ED14_HELRO	T1EEE3_HELRO	T1ED14	T1EEE3	Suf domain-containing protein.	Uncharacterized protein.	0.657
T1ED14_HELRO	T1EEY8_HELRO	T1ED14	T1EEY8	Suf domain-containing protein.	Uncharacterized protein.	0.999
T1ED14_HELRO	T1EIZ3_HELRO	T1ED14	T1EIZ3	Suf domain-containing protein.	C3H1-type domain-containing protein.	0.999
T1ED14_HELRO	T1FAI0_HELRO	T1ED14	T1FAI0	Suf domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.931
T1ED14_HELRO	T1FDJ0_HELRO	T1ED14	T1FDJ0	Suf domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.726
T1ED14_HELRO	T1FDJ1_HELRO	T1ED14	T1FDJ1	Suf domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.726
T1ED14_HELRO	T1FJW8_HELRO	T1ED14	T1FJW8	Suf domain-containing protein.	Uncharacterized protein.	0.917
T1ED14_HELRO	T1FN91_HELRO	T1ED14	T1FN91	Suf domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.726
T1ED14_HELRO	T1FNA5_HELRO	T1ED14	T1FNA5	Suf domain-containing protein.	Uncharacterized protein.	0.999
T1ED14_HELRO	T1FYI9_HELRO	T1ED14	T1FYI9	Suf domain-containing protein.	Uncharacterized protein.	0.839
T1ED14_HELRO	T1FZD9_HELRO	T1ED14	T1FZD9	Suf domain-containing protein.	Cwf21 domain-containing protein.	0.949
T1ED14_HELRO	T1G4D1_HELRO	T1ED14	T1G4D1	Suf domain-containing protein.	Uncharacterized protein.	0.959
T1ED14_HELRO	T1G8Y5_HELRO	T1ED14	T1G8Y5	Suf domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.931
T1ED14_HELRO	T1G8Z9_HELRO	T1ED14	T1G8Z9	Suf domain-containing protein.	Uncharacterized protein.	0.557
T1ED14_HELRO	T1G973_HELRO	T1ED14	T1G973	Suf domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.944
T1EDD5_HELRO	T1ED14_HELRO	T1EDD5	T1ED14	Uncharacterized protein.	Suf domain-containing protein.	0.917