(11 nodes) Tektin network (Helobdella robusta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1EGS9_HELRO	Uncharacterized protein. (392 aa)
	T1EDM3_HELRO	Uncharacterized protein. (428 aa)
	T1F582_HELRO	Uncharacterized protein. (212 aa)
	T1FAV5_HELRO	Uncharacterized protein. (470 aa)
	T1FGW4_HELRO	Uncharacterized protein. (419 aa)
	T1FP86_HELRO	Uncharacterized protein. (464 aa)
	T1FVE9_HELRO	Uncharacterized protein. (400 aa)
	T1FYB0_HELRO	Uncharacterized protein. (409 aa)
	T1G050_HELRO	Uncharacterized protein. (495 aa)
	T1G064_HELRO	Uncharacterized protein. (410 aa)
	T1G8C3_HELRO	Uncharacterized protein. (418 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EDM3_HELRO	T1EGS9_HELRO	T1EDM3	T1EGS9	Uncharacterized protein.	Uncharacterized protein.	0.601
T1EDM3_HELRO	T1F582_HELRO	T1EDM3	T1F582	Uncharacterized protein.	Uncharacterized protein.	0.422
T1EDM3_HELRO	T1FGW4_HELRO	T1EDM3	T1FGW4	Uncharacterized protein.	Uncharacterized protein.	0.587
T1EDM3_HELRO	T1FP86_HELRO	T1EDM3	T1FP86	Uncharacterized protein.	Uncharacterized protein.	0.597
T1EDM3_HELRO	T1FVE9_HELRO	T1EDM3	T1FVE9	Uncharacterized protein.	Uncharacterized protein.	0.592
T1EDM3_HELRO	T1FYB0_HELRO	T1EDM3	T1FYB0	Uncharacterized protein.	Uncharacterized protein.	0.600
T1EDM3_HELRO	T1G050_HELRO	T1EDM3	T1G050	Uncharacterized protein.	Uncharacterized protein.	0.603
T1EDM3_HELRO	T1G064_HELRO	T1EDM3	T1G064	Uncharacterized protein.	Uncharacterized protein.	0.586
T1EGS9_HELRO	T1EDM3_HELRO	T1EGS9	T1EDM3	Uncharacterized protein.	Uncharacterized protein.	0.601
T1F582_HELRO	T1EDM3_HELRO	T1F582	T1EDM3	Uncharacterized protein.	Uncharacterized protein.	0.422
T1F582_HELRO	T1G8C3_HELRO	T1F582	T1G8C3	Uncharacterized protein.	Uncharacterized protein.	0.408
T1FGW4_HELRO	T1EDM3_HELRO	T1FGW4	T1EDM3	Uncharacterized protein.	Uncharacterized protein.	0.587
T1FP86_HELRO	T1EDM3_HELRO	T1FP86	T1EDM3	Uncharacterized protein.	Uncharacterized protein.	0.597
T1FVE9_HELRO	T1EDM3_HELRO	T1FVE9	T1EDM3	Uncharacterized protein.	Uncharacterized protein.	0.592
T1FYB0_HELRO	T1EDM3_HELRO	T1FYB0	T1EDM3	Uncharacterized protein.	Uncharacterized protein.	0.600
T1G050_HELRO	T1EDM3_HELRO	T1G050	T1EDM3	Uncharacterized protein.	Uncharacterized protein.	0.603
T1G064_HELRO	T1EDM3_HELRO	T1G064	T1EDM3	Uncharacterized protein.	Uncharacterized protein.	0.586
T1G8C3_HELRO	T1F582_HELRO	T1G8C3	T1F582	Uncharacterized protein.	Uncharacterized protein.	0.408