(23 nodes) AMP-dependent synthetase/ligase domain network (Helobdella robusta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1ED62_HELRO	AMP-binding domain-containing protein. (716 aa)
	T1ED80_HELRO	Uncharacterized protein. (566 aa)
	T1EDC7_HELRO	Acetyl-coenzyme A synthetase. (678 aa)
	T1EDE6_HELRO	Uncharacterized protein. (647 aa)
	T1EEV7_HELRO	AMP-binding domain-containing protein. (634 aa)
	T1EF02_HELRO	AMP-binding domain-containing protein. (715 aa)
	T1EFH4_HELRO	Uncharacterized protein. (595 aa)
	T1EG09_HELRO	AMP-binding domain-containing protein. (642 aa)
	T1EZZ4_HELRO	Uncharacterized protein. (1157 aa)
	T1F238_HELRO	Uncharacterized protein. (413 aa)
	T1F239_HELRO	AMP-binding domain-containing protein. (224 aa)
	T1F498_HELRO	Uncharacterized protein. (656 aa)
	T1FN87_HELRO	Uncharacterized protein. (590 aa)
	T1FNT4_HELRO	AMP-binding domain-containing protein. (705 aa)
	T1FP69_HELRO	Uncharacterized protein. (1320 aa)
	T1FRZ9_HELRO	AMP-binding domain-containing protein. (716 aa)
	T1G015_HELRO	Uncharacterized protein. (351 aa)
	T1G1X4_HELRO	AMP-binding domain-containing protein. (708 aa)
	T1G431_HELRO	Uncharacterized protein. (558 aa)
	T1G5X3_HELRO	Uncharacterized protein. (486 aa)
	T1G5Y1_HELRO	Uncharacterized protein. (492 aa)
	T1G6V8_HELRO	Uncharacterized protein. (437 aa)
	T1G7V1_HELRO	AMP-binding domain-containing protein. (642 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1ED62_HELRO	T1EF02_HELRO	T1ED62	T1EF02	AMP-binding domain-containing protein.	AMP-binding domain-containing protein.	0.807
T1ED62_HELRO	T1EG09_HELRO	T1ED62	T1EG09	AMP-binding domain-containing protein.	AMP-binding domain-containing protein.	0.674
T1ED62_HELRO	T1EZZ4_HELRO	T1ED62	T1EZZ4	AMP-binding domain-containing protein.	Uncharacterized protein.	0.609
T1ED62_HELRO	T1FNT4_HELRO	T1ED62	T1FNT4	AMP-binding domain-containing protein.	AMP-binding domain-containing protein.	0.621
T1ED62_HELRO	T1FRZ9_HELRO	T1ED62	T1FRZ9	AMP-binding domain-containing protein.	AMP-binding domain-containing protein.	0.806
T1ED62_HELRO	T1G1X4_HELRO	T1ED62	T1G1X4	AMP-binding domain-containing protein.	AMP-binding domain-containing protein.	0.805
T1ED62_HELRO	T1G7V1_HELRO	T1ED62	T1G7V1	AMP-binding domain-containing protein.	AMP-binding domain-containing protein.	0.613
T1ED80_HELRO	T1EDC7_HELRO	T1ED80	T1EDC7	Uncharacterized protein.	Acetyl-coenzyme A synthetase.	0.571
T1ED80_HELRO	T1EDE6_HELRO	T1ED80	T1EDE6	Uncharacterized protein.	Uncharacterized protein.	0.571
T1ED80_HELRO	T1EF02_HELRO	T1ED80	T1EF02	Uncharacterized protein.	AMP-binding domain-containing protein.	0.406
T1ED80_HELRO	T1EZZ4_HELRO	T1ED80	T1EZZ4	Uncharacterized protein.	Uncharacterized protein.	0.803
T1ED80_HELRO	T1FRZ9_HELRO	T1ED80	T1FRZ9	Uncharacterized protein.	AMP-binding domain-containing protein.	0.404
T1ED80_HELRO	T1G1X4_HELRO	T1ED80	T1G1X4	Uncharacterized protein.	AMP-binding domain-containing protein.	0.415
T1EDC7_HELRO	T1ED80_HELRO	T1EDC7	T1ED80	Acetyl-coenzyme A synthetase.	Uncharacterized protein.	0.571
T1EDC7_HELRO	T1EEV7_HELRO	T1EDC7	T1EEV7	Acetyl-coenzyme A synthetase.	AMP-binding domain-containing protein.	0.571
T1EDC7_HELRO	T1EFH4_HELRO	T1EDC7	T1EFH4	Acetyl-coenzyme A synthetase.	Uncharacterized protein.	0.571
T1EDC7_HELRO	T1EZZ4_HELRO	T1EDC7	T1EZZ4	Acetyl-coenzyme A synthetase.	Uncharacterized protein.	0.699
T1EDC7_HELRO	T1F238_HELRO	T1EDC7	T1F238	Acetyl-coenzyme A synthetase.	Uncharacterized protein.	0.571
T1EDC7_HELRO	T1F498_HELRO	T1EDC7	T1F498	Acetyl-coenzyme A synthetase.	Uncharacterized protein.	0.571
T1EDC7_HELRO	T1FN87_HELRO	T1EDC7	T1FN87	Acetyl-coenzyme A synthetase.	Uncharacterized protein.	0.571