(90 nodes) Small GTPase network (Helobdella robusta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1EL04_HELRO	Uncharacterized protein. (81 aa)
	T1EKE1_HELRO	Uncharacterized protein. (96 aa)
	T1EJA8_HELRO	Uncharacterized protein. (199 aa)
	T1EJ77_HELRO	Uncharacterized protein. (156 aa)
	T1G097_HELRO	Uncharacterized protein. (195 aa)
	T1EJ60_HELRO	Uncharacterized protein. (149 aa)
	T1EI73_HELRO	Uncharacterized protein. (172 aa)
	T1EH27_HELRO	Uncharacterized protein. (120 aa)
	T1EH22_HELRO	Uncharacterized protein. (167 aa)
	T1EH04_HELRO	SOCS box domain-containing protein. (140 aa)
	T1EGW3_HELRO	Uncharacterized protein. (153 aa)
	T1EGU7_HELRO	Uncharacterized protein. (158 aa)
	T1EFC7_HELRO	Uncharacterized protein. (193 aa)
	T1EFC6_HELRO	Uncharacterized protein. (259 aa)
	T1EF20_HELRO	Uncharacterized protein. (205 aa)
	T1EEY9_HELRO	Uncharacterized protein. (799 aa)
	T1EEN7_HELRO	Uncharacterized protein. (211 aa)
	T1EE66_HELRO	Uncharacterized protein. (210 aa)
	T1EDW0_HELRO	Uncharacterized protein. (173 aa)
	T1EDQ0_HELRO	Uncharacterized protein. (212 aa)
	T1EDN7_HELRO	Uncharacterized protein. (211 aa)
	T1EDI6_HELRO	Uncharacterized protein. (221 aa)
	T1ED56_HELRO	BTB domain-containing protein. (307 aa)
	T1G363_HELRO	Uncharacterized protein. (183 aa)
	T1G409_HELRO	Uncharacterized protein. (135 aa)
	T1G4A7_HELRO	Uncharacterized protein. (185 aa)
	T1G4Y3_HELRO	Uncharacterized protein. (201 aa)
	T1G519_HELRO	Uncharacterized protein. (176 aa)
	T1G535_HELRO	Uncharacterized protein. (222 aa)
	T1G571_HELRO	Uncharacterized protein. (158 aa)
	T1G5G5_HELRO	Uncharacterized protein. (227 aa)
	T1G5H3_HELRO	Uncharacterized protein. (227 aa)
	T1G5L0_HELRO	Uncharacterized protein. (195 aa)
	T1G6S4_HELRO	Uncharacterized protein. (75 aa)
	T1G6W3_HELRO	Uncharacterized protein. (243 aa)
	T1G6Y4_HELRO	Uncharacterized protein. (183 aa)
	T1FFJ7_HELRO	Uncharacterized protein. (552 aa)
	T1F583_HELRO	Uncharacterized protein. (325 aa)
	T1F4E7_HELRO	Uncharacterized protein. (177 aa)
	T1EMF6_HELRO	Uncharacterized protein. (187 aa)
	T1EMF2_HELRO	Uncharacterized protein. (181 aa)
	T1EMA1_HELRO	Uncharacterized protein. (178 aa)
	T1EM67_HELRO	Uncharacterized protein. (186 aa)
	T1EM52_HELRO	Uncharacterized protein. (204 aa)
	T1G7W5_HELRO	Uncharacterized protein. (172 aa)
	T1FI45_HELRO	Uncharacterized protein. (116 aa)
	T1FL32_HELRO	Uncharacterized protein. (248 aa)
	T1FM66_HELRO	Uncharacterized protein. (216 aa)
	T1FMD3_HELRO	Uncharacterized protein. (209 aa)
	T1FMD9_HELRO	Uncharacterized protein. (203 aa)
	T1FME2_HELRO	Uncharacterized protein. (209 aa)
	T1FMJ6_HELRO	Uncharacterized protein. (192 aa)
	T1FMS8_HELRO	Uncharacterized protein. (205 aa)
	T1FMX0_HELRO	Uncharacterized protein. (216 aa)
	T1FN60_HELRO	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (215 aa)
	T1FN85_HELRO	Uncharacterized protein. (211 aa)
	T1FNA1_HELRO	Uncharacterized protein. (205 aa)
	T1FNG0_HELRO	Uncharacterized protein. (216 aa)
	T1FNG8_HELRO	Uncharacterized protein. (204 aa)
	T1FNL9_HELRO	Uncharacterized protein. (212 aa)
	T1FG19_HELRO	Uncharacterized protein. (466 aa)
	T1FPC0_HELRO	Uncharacterized protein. (161 aa)
	T1FQ62_HELRO	Uncharacterized protein. (321 aa)
	T1FSR1_HELRO	Uncharacterized protein. (218 aa)
	T1FU65_HELRO	Uncharacterized protein. (210 aa)
	T1FVW4_HELRO	Uncharacterized protein. (209 aa)
	T1FXI2_HELRO	Uncharacterized protein. (574 aa)
	T1G014_HELRO	Uncharacterized protein. (219 aa)
	T1ENZ3_HELRO	Uncharacterized protein. (124 aa)
	T1ERD1_HELRO	Uncharacterized protein. (203 aa)
	T1EUD0_HELRO	Uncharacterized protein. (191 aa)
	T1EUQ3_HELRO	Uncharacterized protein. (187 aa)
	T1EWG6_HELRO	Uncharacterized protein. (265 aa)
	T1FYQ5_HELRO	Uncharacterized protein. (174 aa)
	T1FYX5_HELRO	Uncharacterized protein. (242 aa)
	T1FZ83_HELRO	Uncharacterized protein. (192 aa)
	T1FZN2_HELRO	Uncharacterized protein. (192 aa)
	T1FZS3_HELRO	Uncharacterized protein. (206 aa)
	T1G004_HELRO	Uncharacterized protein. (253 aa)
	T1G211_HELRO	Uncharacterized protein. (197 aa)
	T1G099_HELRO	Uncharacterized protein. (199 aa)
	T1G2T1_HELRO	Uncharacterized protein. (266 aa)
	T1EM26_HELRO	Uncharacterized protein. (182 aa)
	T1ELY9_HELRO	Uncharacterized protein. (191 aa)
	T1ELU7_HELRO	Uncharacterized protein. (202 aa)
	T1ELR4_HELRO	Uncharacterized protein. (200 aa)
	T1ELR1_HELRO	Uncharacterized protein. (191 aa)
	T1ELK4_HELRO	Uncharacterized protein. (202 aa)
	T1ELF1_HELRO	Uncharacterized protein. (215 aa)
	T1ELD6_HELRO	Uncharacterized protein. (179 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1ED56_HELRO	T1EM52_HELRO	T1ED56	T1EM52	BTB domain-containing protein.	Uncharacterized protein.	0.481
T1EDI6_HELRO	T1EDQ0_HELRO	T1EDI6	T1EDQ0	Uncharacterized protein.	Uncharacterized protein.	0.439
T1EDI6_HELRO	T1EWG6_HELRO	T1EDI6	T1EWG6	Uncharacterized protein.	Uncharacterized protein.	0.424
T1EDI6_HELRO	T1FM66_HELRO	T1EDI6	T1FM66	Uncharacterized protein.	Uncharacterized protein.	0.428
T1EDI6_HELRO	T1FN85_HELRO	T1EDI6	T1FN85	Uncharacterized protein.	Uncharacterized protein.	0.441
T1EDI6_HELRO	T1FSR1_HELRO	T1EDI6	T1FSR1	Uncharacterized protein.	Uncharacterized protein.	0.448
T1EDI6_HELRO	T1G6Y4_HELRO	T1EDI6	T1G6Y4	Uncharacterized protein.	Uncharacterized protein.	0.438
T1EDN7_HELRO	T1EDQ0_HELRO	T1EDN7	T1EDQ0	Uncharacterized protein.	Uncharacterized protein.	0.457
T1EDN7_HELRO	T1EE66_HELRO	T1EDN7	T1EE66	Uncharacterized protein.	Uncharacterized protein.	0.558
T1EDN7_HELRO	T1EEN7_HELRO	T1EDN7	T1EEN7	Uncharacterized protein.	Uncharacterized protein.	0.474
T1EDN7_HELRO	T1EF20_HELRO	T1EDN7	T1EF20	Uncharacterized protein.	Uncharacterized protein.	0.560
T1EDN7_HELRO	T1EH04_HELRO	T1EDN7	T1EH04	Uncharacterized protein.	SOCS box domain-containing protein.	0.439
T1EDN7_HELRO	T1EJ77_HELRO	T1EDN7	T1EJ77	Uncharacterized protein.	Uncharacterized protein.	0.570
T1EDN7_HELRO	T1EJA8_HELRO	T1EDN7	T1EJA8	Uncharacterized protein.	Uncharacterized protein.	0.581
T1EDN7_HELRO	T1EL04_HELRO	T1EDN7	T1EL04	Uncharacterized protein.	Uncharacterized protein.	0.439
T1EDN7_HELRO	T1ELK4_HELRO	T1EDN7	T1ELK4	Uncharacterized protein.	Uncharacterized protein.	0.558
T1EDN7_HELRO	T1ELU7_HELRO	T1EDN7	T1ELU7	Uncharacterized protein.	Uncharacterized protein.	0.410
T1EDN7_HELRO	T1EM52_HELRO	T1EDN7	T1EM52	Uncharacterized protein.	Uncharacterized protein.	0.561
T1EDN7_HELRO	T1EM67_HELRO	T1EDN7	T1EM67	Uncharacterized protein.	Uncharacterized protein.	0.543
T1EDN7_HELRO	T1EMF2_HELRO	T1EDN7	T1EMF2	Uncharacterized protein.	Uncharacterized protein.	0.548