(16 nodes) Tudor domain network (Helobdella robusta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1FNU4_HELRO	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs. (914 aa)
	T1FPK0_HELRO	Tudor domain-containing protein. (1259 aa)
	T1FQ43_HELRO	Uncharacterized protein. (1816 aa)
	T1FRN0_HELRO	Uncharacterized protein. (418 aa)
	T1EDF3_HELRO	Tudor domain-containing protein. (852 aa)
	T1EMU0_HELRO	Tudor domain-containing protein. (198 aa)
	T1EP56_HELRO	Uncharacterized protein. (1250 aa)
	T1EUC1_HELRO	Tudor domain-containing protein. (607 aa)
	T1F3Z4_HELRO	Uncharacterized protein. (1468 aa)
	T1F4G7_HELRO	HTH OST-type domain-containing protein. (711 aa)
	T1F816_HELRO	Tudor domain-containing protein. (458 aa)
	T1FYH0_HELRO	Tudor domain-containing protein. (233 aa)
	T1FVA1_HELRO	Tudor domain-containing protein. (677 aa)
	T1FU13_HELRO	Tudor domain-containing protein. (1068 aa)
	T1FTJ5_HELRO	Uncharacterized protein. (791 aa)
	T1FGY3_HELRO	Tudor domain-containing protein. (1243 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EDF3_HELRO	T1F3Z4_HELRO	T1EDF3	T1F3Z4	Tudor domain-containing protein.	Uncharacterized protein.	0.401
T1F3Z4_HELRO	T1EDF3_HELRO	T1F3Z4	T1EDF3	Uncharacterized protein.	Tudor domain-containing protein.	0.401
T1F3Z4_HELRO	T1F816_HELRO	T1F3Z4	T1F816	Uncharacterized protein.	Tudor domain-containing protein.	0.645
T1F3Z4_HELRO	T1FU13_HELRO	T1F3Z4	T1FU13	Uncharacterized protein.	Tudor domain-containing protein.	0.401
T1F816_HELRO	T1F3Z4_HELRO	T1F816	T1F3Z4	Tudor domain-containing protein.	Uncharacterized protein.	0.645
T1F816_HELRO	T1FNU4_HELRO	T1F816	T1FNU4	Tudor domain-containing protein.	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.	0.670
T1F816_HELRO	T1FVA1_HELRO	T1F816	T1FVA1	Tudor domain-containing protein.	Tudor domain-containing protein.	0.480
T1FNU4_HELRO	T1F816_HELRO	T1FNU4	T1F816	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.	Tudor domain-containing protein.	0.670
T1FU13_HELRO	T1F3Z4_HELRO	T1FU13	T1F3Z4	Tudor domain-containing protein.	Uncharacterized protein.	0.401
T1FVA1_HELRO	T1F816_HELRO	T1FVA1	T1F816	Tudor domain-containing protein.	Tudor domain-containing protein.	0.480