15 items (Helobdella robusta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1EDH0_HELRO	AA_TRNA_LIGASE_II domain-containing protein. (572 aa)
	T1EEK1_HELRO	AA_TRNA_LIGASE_II domain-containing protein. (559 aa)
	T1EFN4_HELRO	AA_TRNA_LIGASE_II domain-containing protein. (111 aa)
	T1ELF2_HELRO	Uncharacterized protein. (680 aa)
	T1ELZ2_HELRO	Uncharacterized protein. (513 aa)
	T1F4A2_HELRO	Uncharacterized protein. (1167 aa)
	T1FBW3_HELRO	AA_TRNA_LIGASE_II domain-containing protein. (215 aa)
	T1FG52_HELRO	Lysine--tRNA ligase. (616 aa)
	T1FMH7_HELRO	AA_TRNA_LIGASE_II domain-containing protein. (512 aa)
	T1FNR3_HELRO	AA_TRNA_LIGASE_II domain-containing protein. (532 aa)
	T1FUM0_HELRO	AA_TRNA_LIGASE_II domain-containing protein. (664 aa)
	T1G2I7_HELRO	AA_TRNA_LIGASE_II domain-containing protein. (378 aa)
	T1G3F3_HELRO	Uncharacterized protein. (1546 aa)
	T1G5S6_HELRO	AA_TRNA_LIGASE_II domain-containing protein. (674 aa)
	T1G7R2_HELRO	AA_TRNA_LIGASE_II domain-containing protein. (497 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EDH0_HELRO	T1EEK1_HELRO	T1EDH0	T1EEK1	AA_TRNA_LIGASE_II domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.999
T1EDH0_HELRO	T1EFN4_HELRO	T1EDH0	T1EFN4	AA_TRNA_LIGASE_II domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.843
T1EDH0_HELRO	T1ELF2_HELRO	T1EDH0	T1ELF2	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein.	0.969
T1EDH0_HELRO	T1ELZ2_HELRO	T1EDH0	T1ELZ2	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein.	0.827
T1EDH0_HELRO	T1F4A2_HELRO	T1EDH0	T1F4A2	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein.	0.781
T1EDH0_HELRO	T1FBW3_HELRO	T1EDH0	T1FBW3	AA_TRNA_LIGASE_II domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.988
T1EDH0_HELRO	T1FG52_HELRO	T1EDH0	T1FG52	AA_TRNA_LIGASE_II domain-containing protein.	Lysine--tRNA ligase.	0.999
T1EDH0_HELRO	T1FMH7_HELRO	T1EDH0	T1FMH7	AA_TRNA_LIGASE_II domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.843
T1EDH0_HELRO	T1FNR3_HELRO	T1EDH0	T1FNR3	AA_TRNA_LIGASE_II domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.999
T1EDH0_HELRO	T1FUM0_HELRO	T1EDH0	T1FUM0	AA_TRNA_LIGASE_II domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.984
T1EDH0_HELRO	T1G2I7_HELRO	T1EDH0	T1G2I7	AA_TRNA_LIGASE_II domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.988
T1EDH0_HELRO	T1G3F3_HELRO	T1EDH0	T1G3F3	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein.	0.999
T1EDH0_HELRO	T1G5S6_HELRO	T1EDH0	T1G5S6	AA_TRNA_LIGASE_II domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.833
T1EDH0_HELRO	T1G7R2_HELRO	T1EDH0	T1G7R2	AA_TRNA_LIGASE_II domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.905
T1EEK1_HELRO	T1EDH0_HELRO	T1EEK1	T1EDH0	AA_TRNA_LIGASE_II domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.999
T1EEK1_HELRO	T1EFN4_HELRO	T1EEK1	T1EFN4	AA_TRNA_LIGASE_II domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.637
T1EEK1_HELRO	T1ELF2_HELRO	T1EEK1	T1ELF2	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein.	0.692
T1EEK1_HELRO	T1ELZ2_HELRO	T1EEK1	T1ELZ2	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein.	0.648
T1EEK1_HELRO	T1FG52_HELRO	T1EEK1	T1FG52	AA_TRNA_LIGASE_II domain-containing protein.	Lysine--tRNA ligase.	0.769
T1EEK1_HELRO	T1FMH7_HELRO	T1EEK1	T1FMH7	AA_TRNA_LIGASE_II domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.655