(22 nodes) PX domain superfamily network (Helobdella robusta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1ED73_HELRO	PX domain-containing protein. (161 aa)
	T1EDY2_HELRO	PX domain-containing protein. (381 aa)
	T1EEU5_HELRO	Uncharacterized protein. (602 aa)
	T1EF15_HELRO	PX domain-containing protein. (395 aa)
	T1EFY2_HELRO	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (321 aa)
	T1FMK9_HELRO	Sorting nexin; Involved in several stages of intracellular trafficking. (407 aa)
	T1FND0_HELRO	Uncharacterized protein. (551 aa)
	T1FPB9_HELRO	PX domain-containing protein. (452 aa)
	T1FRD6_HELRO	PX domain-containing protein. (283 aa)
	T1FSH1_HELRO	CCHC-type domain-containing protein. (872 aa)
	T1FSJ1_HELRO	Uncharacterized protein. (649 aa)
	T1FTX7_HELRO	PX domain-containing protein. (766 aa)
	T1FU06_HELRO	Uncharacterized protein. (543 aa)
	T1FU97_HELRO	Uncharacterized protein. (1245 aa)
	T1FUQ8_HELRO	Uncharacterized protein. (355 aa)
	T1FUR4_HELRO	PX domain-containing protein. (642 aa)
	T1FXM8_HELRO	PX domain-containing protein. (449 aa)
	T1G1I8_HELRO	PX domain-containing protein. (198 aa)
	T1G542_HELRO	PX domain-containing protein. (363 aa)
	T1G5N5_HELRO	PX domain-containing protein. (364 aa)
	T1G9G8_HELRO	PX domain-containing protein. (438 aa)
	T1G9U9_HELRO	PX domain-containing protein. (459 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1ED73_HELRO	T1EDY2_HELRO	T1ED73	T1EDY2	PX domain-containing protein.	PX domain-containing protein.	0.618
T1ED73_HELRO	T1FMK9_HELRO	T1ED73	T1FMK9	PX domain-containing protein.	Sorting nexin; Involved in several stages of intracellular trafficking.	0.692
T1ED73_HELRO	T1FPB9_HELRO	T1ED73	T1FPB9	PX domain-containing protein.	PX domain-containing protein.	0.613
T1ED73_HELRO	T1FRD6_HELRO	T1ED73	T1FRD6	PX domain-containing protein.	PX domain-containing protein.	0.404
T1ED73_HELRO	T1FSJ1_HELRO	T1ED73	T1FSJ1	PX domain-containing protein.	Uncharacterized protein.	0.567
T1ED73_HELRO	T1FTX7_HELRO	T1ED73	T1FTX7	PX domain-containing protein.	PX domain-containing protein.	0.428
T1ED73_HELRO	T1FU06_HELRO	T1ED73	T1FU06	PX domain-containing protein.	Uncharacterized protein.	0.567
T1ED73_HELRO	T1FUR4_HELRO	T1ED73	T1FUR4	PX domain-containing protein.	PX domain-containing protein.	0.569
T1ED73_HELRO	T1G9G8_HELRO	T1ED73	T1G9G8	PX domain-containing protein.	PX domain-containing protein.	0.637
T1ED73_HELRO	T1G9U9_HELRO	T1ED73	T1G9U9	PX domain-containing protein.	PX domain-containing protein.	0.428
T1EDY2_HELRO	T1ED73_HELRO	T1EDY2	T1ED73	PX domain-containing protein.	PX domain-containing protein.	0.618
T1EDY2_HELRO	T1EEU5_HELRO	T1EDY2	T1EEU5	PX domain-containing protein.	Uncharacterized protein.	0.525
T1EDY2_HELRO	T1EFY2_HELRO	T1EDY2	T1EFY2	PX domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.583
T1EDY2_HELRO	T1FMK9_HELRO	T1EDY2	T1FMK9	PX domain-containing protein.	Sorting nexin; Involved in several stages of intracellular trafficking.	0.922
T1EDY2_HELRO	T1FND0_HELRO	T1EDY2	T1FND0	PX domain-containing protein.	Uncharacterized protein.	0.525
T1EDY2_HELRO	T1FPB9_HELRO	T1EDY2	T1FPB9	PX domain-containing protein.	PX domain-containing protein.	0.491
T1EDY2_HELRO	T1FTX7_HELRO	T1EDY2	T1FTX7	PX domain-containing protein.	PX domain-containing protein.	0.905
T1EDY2_HELRO	T1G5N5_HELRO	T1EDY2	T1G5N5	PX domain-containing protein.	PX domain-containing protein.	0.525
T1EDY2_HELRO	T1G9G8_HELRO	T1EDY2	T1G9G8	PX domain-containing protein.	PX domain-containing protein.	0.439
T1EDY2_HELRO	T1G9U9_HELRO	T1EDY2	T1G9U9	PX domain-containing protein.	PX domain-containing protein.	0.907