(41 nodes) Cyclic nucleotide-monophosphate binding domain network (Helobdella robusta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1G7X6_HELRO	Cyclic nucleotide-binding domain-containing protein. (471 aa)
	T1FN83_HELRO	Uncharacterized protein. (399 aa)
	T1F9F9_HELRO	Cyclic nucleotide-binding domain-containing protein. (580 aa)
	T1F381_HELRO	Uncharacterized protein. (1551 aa)
	T1ESP8_HELRO	Cyclic nucleotide-binding domain-containing protein. (394 aa)
	T1ESD2_HELRO	Cyclic nucleotide-binding domain-containing protein. (832 aa)
	T1EQZ5_HELRO	Uncharacterized protein. (687 aa)
	T1EQ94_HELRO	Cyclic nucleotide-binding domain-containing protein. (306 aa)
	T1EMF9_HELRO	Uncharacterized protein. (673 aa)
	T1EHR2_HELRO	Uncharacterized protein. (677 aa)
	T1EGU6_HELRO	Cyclic nucleotide-binding domain-containing protein. (271 aa)
	T1EGP5_HELRO	Cyclic nucleotide-binding domain-containing protein. (519 aa)
	T1EGN7_HELRO	Uncharacterized protein. (706 aa)
	T1EGK4_HELRO	Cyclic nucleotide-binding domain-containing protein. (796 aa)
	T1EEK6_HELRO	Uncharacterized protein. (381 aa)
	T1EEJ4_HELRO	Uncharacterized protein. (359 aa)
	T1FN99_HELRO	Uncharacterized protein. (341 aa)
	T1FP70_HELRO	Uncharacterized protein. (641 aa)
	T1FPW2_HELRO	Uncharacterized protein. (906 aa)
	T1FS32_HELRO	Uncharacterized protein. (1255 aa)
	T1EDP8_HELRO	Cyclic nucleotide-binding domain-containing protein. (375 aa)
	T1FU04_HELRO	Cyclic nucleotide-binding domain-containing protein. (187 aa)
	T1FX16_HELRO	Cyclic nucleotide-binding domain-containing protein. (509 aa)
	T1FXG3_HELRO	Cyclic nucleotide-binding domain-containing protein. (502 aa)
	T1FXP5_HELRO	Cyclic nucleotide-binding domain-containing protein. (504 aa)
	T1FZ00_HELRO	Uncharacterized protein. (1059 aa)
	T1FZX6_HELRO	Cyclic nucleotide-binding domain-containing protein. (473 aa)
	T1G0P3_HELRO	Cyclic nucleotide-binding domain-containing protein. (486 aa)
	T1G0Y2_HELRO	Uncharacterized protein. (369 aa)
	T1G151_HELRO	Cyclic nucleotide-binding domain-containing protein. (651 aa)
	T1G2V1_HELRO	Cyclic nucleotide-binding domain-containing protein. (550 aa)
	T1G398_HELRO	Cyclic nucleotide-binding domain-containing protein. (475 aa)
	T1G3D1_HELRO	Cyclic nucleotide-binding domain-containing protein. (323 aa)
	T1G466_HELRO	Cyclic nucleotide-binding domain-containing protein. (516 aa)
	T1G4C6_HELRO	Uncharacterized protein. (717 aa)
	T1G4M2_HELRO	Cyclic nucleotide-binding domain-containing protein. (491 aa)
	T1G4Y5_HELRO	Uncharacterized protein. (377 aa)
	T1G666_HELRO	Cyclic nucleotide-binding domain-containing protein. (440 aa)
	T1G6J5_HELRO	Cyclic nucleotide-binding domain-containing protein. (553 aa)
	T1G9D8_HELRO	Uncharacterized protein. (515 aa)
	T1G9K3_HELRO	Cyclic nucleotide-binding domain-containing protein. (638 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EDP8_HELRO	T1EGP5_HELRO	T1EDP8	T1EGP5	Cyclic nucleotide-binding domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.555
T1EDP8_HELRO	T1EGU6_HELRO	T1EDP8	T1EGU6	Cyclic nucleotide-binding domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.549
T1EDP8_HELRO	T1EQ94_HELRO	T1EDP8	T1EQ94	Cyclic nucleotide-binding domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.551
T1EDP8_HELRO	T1FXG3_HELRO	T1EDP8	T1FXG3	Cyclic nucleotide-binding domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.552
T1EDP8_HELRO	T1G151_HELRO	T1EDP8	T1G151	Cyclic nucleotide-binding domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.550
T1EDP8_HELRO	T1G2V1_HELRO	T1EDP8	T1G2V1	Cyclic nucleotide-binding domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.552
T1EDP8_HELRO	T1G9K3_HELRO	T1EDP8	T1G9K3	Cyclic nucleotide-binding domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.551
T1EEJ4_HELRO	T1EEK6_HELRO	T1EEJ4	T1EEK6	Uncharacterized protein.	Uncharacterized protein.	0.552
T1EEJ4_HELRO	T1FN83_HELRO	T1EEJ4	T1FN83	Uncharacterized protein.	Uncharacterized protein.	0.569
T1EEJ4_HELRO	T1FN99_HELRO	T1EEJ4	T1FN99	Uncharacterized protein.	Uncharacterized protein.	0.568
T1EEJ4_HELRO	T1G0Y2_HELRO	T1EEJ4	T1G0Y2	Uncharacterized protein.	Uncharacterized protein.	0.567
T1EEK6_HELRO	T1EEJ4_HELRO	T1EEK6	T1EEJ4	Uncharacterized protein.	Uncharacterized protein.	0.552
T1EEK6_HELRO	T1FN83_HELRO	T1EEK6	T1FN83	Uncharacterized protein.	Uncharacterized protein.	0.569
T1EEK6_HELRO	T1FN99_HELRO	T1EEK6	T1FN99	Uncharacterized protein.	Uncharacterized protein.	0.565
T1EEK6_HELRO	T1G0Y2_HELRO	T1EEK6	T1G0Y2	Uncharacterized protein.	Uncharacterized protein.	0.563
T1EGP5_HELRO	T1EDP8_HELRO	T1EGP5	T1EDP8	Cyclic nucleotide-binding domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.555
T1EGP5_HELRO	T1EGU6_HELRO	T1EGP5	T1EGU6	Cyclic nucleotide-binding domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.546
T1EGP5_HELRO	T1EQ94_HELRO	T1EGP5	T1EQ94	Cyclic nucleotide-binding domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.549
T1EGP5_HELRO	T1FXG3_HELRO	T1EGP5	T1FXG3	Cyclic nucleotide-binding domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.550
T1EGP5_HELRO	T1G151_HELRO	T1EGP5	T1G151	Cyclic nucleotide-binding domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.548