(13 nodes) Mannose type O-glycan biosynthesis network (Helobdella robusta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T1EDX7_HELRO	Uncharacterized protein. (540 aa)
	T1ELF6_HELRO	Uncharacterized protein. (514 aa)
	T1F683_HELRO	Uncharacterized protein. (306 aa)
	T1FNS8_HELRO	Uncharacterized protein. (349 aa)
	T1FQF5_HELRO	Uncharacterized protein. (789 aa)
	T1FTF2_HELRO	Uncharacterized protein. (500 aa)
	T1FU21_HELRO	ILEI domain-containing protein. (663 aa)
	T1FXA5_HELRO	Uncharacterized protein. (233 aa)
	T1G0T5_HELRO	Uncharacterized protein. (285 aa)
	T1G0T9_HELRO	Uncharacterized protein. (220 aa)
	T1G169_HELRO	Uncharacterized protein. (253 aa)
	T1G1V0_HELRO	Uncharacterized protein. (248 aa)
	T1G7R6_HELRO	Uncharacterized protein. (195 aa)

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EDX7_HELRO	T1ELF6_HELRO	T1EDX7	T1ELF6	Uncharacterized protein.	Uncharacterized protein.	0.966
T1EDX7_HELRO	T1F683_HELRO	T1EDX7	T1F683	Uncharacterized protein.	Uncharacterized protein.	0.618
T1EDX7_HELRO	T1FQF5_HELRO	T1EDX7	T1FQF5	Uncharacterized protein.	Uncharacterized protein.	0.933
T1EDX7_HELRO	T1FTF2_HELRO	T1EDX7	T1FTF2	Uncharacterized protein.	Uncharacterized protein.	0.620
T1EDX7_HELRO	T1FU21_HELRO	T1EDX7	T1FU21	Uncharacterized protein.	ILEI domain-containing protein.	0.933
T1EDX7_HELRO	T1FXA5_HELRO	T1EDX7	T1FXA5	Uncharacterized protein.	Uncharacterized protein.	0.547
T1EDX7_HELRO	T1G0T5_HELRO	T1EDX7	T1G0T5	Uncharacterized protein.	Uncharacterized protein.	0.446
T1EDX7_HELRO	T1G1V0_HELRO	T1EDX7	T1G1V0	Uncharacterized protein.	Uncharacterized protein.	0.621
T1ELF6_HELRO	T1EDX7_HELRO	T1ELF6	T1EDX7	Uncharacterized protein.	Uncharacterized protein.	0.966
T1ELF6_HELRO	T1F683_HELRO	T1ELF6	T1F683	Uncharacterized protein.	Uncharacterized protein.	0.623
T1ELF6_HELRO	T1FTF2_HELRO	T1ELF6	T1FTF2	Uncharacterized protein.	Uncharacterized protein.	0.628
T1ELF6_HELRO	T1G0T5_HELRO	T1ELF6	T1G0T5	Uncharacterized protein.	Uncharacterized protein.	0.558
T1ELF6_HELRO	T1G1V0_HELRO	T1ELF6	T1G1V0	Uncharacterized protein.	Uncharacterized protein.	0.690
T1F683_HELRO	T1EDX7_HELRO	T1F683	T1EDX7	Uncharacterized protein.	Uncharacterized protein.	0.618
T1F683_HELRO	T1ELF6_HELRO	T1F683	T1ELF6	Uncharacterized protein.	Uncharacterized protein.	0.623
T1F683_HELRO	T1FTF2_HELRO	T1F683	T1FTF2	Uncharacterized protein.	Uncharacterized protein.	0.960
T1F683_HELRO	T1FXA5_HELRO	T1F683	T1FXA5	Uncharacterized protein.	Uncharacterized protein.	0.543
T1F683_HELRO	T1G0T5_HELRO	T1F683	T1G0T5	Uncharacterized protein.	Uncharacterized protein.	0.978
T1F683_HELRO	T1G1V0_HELRO	T1F683	T1G1V0	Uncharacterized protein.	Uncharacterized protein.	0.572
T1FNS8_HELRO	T1FQF5_HELRO	T1FNS8	T1FQF5	Uncharacterized protein.	Uncharacterized protein.	0.908