31 items (Anabas testudineus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSATEP00000001358	Small nuclear ribonucleoprotein Sm D2. (120 aa)
	naa38	N(alpha)-acetyltransferase 38, NatC auxiliary subunit. (109 aa)
	LOC113151674	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	LOC113151674-2	Small nuclear ribonucleoprotein E. (92 aa)
	LSM10	LSM10, U7 small nuclear RNA associated. (135 aa)
	phf5a	PHD finger protein 5A. (110 aa)
	NCBP1	Nuclear cap binding protein subunit 1. (795 aa)
	phf5a-2	PHD finger-like domain-containing protein 5A. (110 aa)
	snrnp70	Small nuclear ribonucleoprotein 70 (U1). (454 aa)
	sf3a3	Splicing factor 3a, subunit 3. (501 aa)
	sf3b5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	snrpb	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	ENSATEP00000016610	Small nuclear ribonucleoprotein polypeptide A. (253 aa)
	sf3b4	Splicing factor 3b, subunit 4. (403 aa)
	ddx46	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (1063 aa)
	sf3b3	Splicing factor 3b, subunit 3. (1217 aa)
	ENSATEP00000019857	Small nuclear ribonucleoprotein polypeptide A. (223 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	sf3a2	Splicing factor 3a, subunit 2. (296 aa)
	snrpb2	Small nuclear ribonucleoprotein polypeptide B2. (218 aa)
	sf3b6	Splicing factor 3b, subunit 6. (125 aa)
	zmat5	Zinc finger, matrin-type 5. (175 aa)
	sf3b1	Splicing factor 3b, subunit 1. (1314 aa)
	ENSATEP00000029779	Small nuclear ribonucleoprotein Sm D3. (140 aa)
	ENSATEP00000030753	Splicing factor 3a, subunit 1. (840 aa)
	ENSATEP00000030794	Small nuclear ribonucleoprotein 35 (U11/U12). (193 aa)
	ncbp2	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
	ENSATEP00000032894	Small nuclear ribonucleoprotein polypeptide F. (93 aa)
	ddx42	DEAD (Asp-Glu-Ala-Asp) box helicase 42. (911 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	snrpc	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (148 aa)

Your Current Organism:

Anabas testudineus

NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSATEP00000001358	ENSATEP00000016610	ENSATEP00000001358	ENSATEP00000016610	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein polypeptide A.	0.998
ENSATEP00000001358	ENSATEP00000019857	ENSATEP00000001358	ENSATEP00000019857	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein polypeptide A.	0.976
ENSATEP00000001358	ENSATEP00000029779	ENSATEP00000001358	ENSATEP00000029779	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D3.	0.999
ENSATEP00000001358	ENSATEP00000030753	ENSATEP00000001358	ENSATEP00000030753	Small nuclear ribonucleoprotein Sm D2.	Splicing factor 3a, subunit 1.	0.985
ENSATEP00000001358	ENSATEP00000030794	ENSATEP00000001358	ENSATEP00000030794	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein 35 (U11/U12).	0.983
ENSATEP00000001358	ENSATEP00000032894	ENSATEP00000001358	ENSATEP00000032894	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein polypeptide F.	0.999
ENSATEP00000001358	LOC113151674	ENSATEP00000001358	ENSATEP00000007497	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
ENSATEP00000001358	LOC113151674-2	ENSATEP00000001358	ENSATEP00000007989	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E.	0.998
ENSATEP00000001358	LSM10	ENSATEP00000001358	ENSATEP00000008979	Small nuclear ribonucleoprotein Sm D2.	LSM10, U7 small nuclear RNA associated.	0.998
ENSATEP00000001358	NCBP1	ENSATEP00000001358	ENSATEP00000009945	Small nuclear ribonucleoprotein Sm D2.	Nuclear cap binding protein subunit 1.	0.988
ENSATEP00000001358	ddx42	ENSATEP00000001358	ENSATEP00000033257	Small nuclear ribonucleoprotein Sm D2.	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	0.807
ENSATEP00000001358	ddx46	ENSATEP00000001358	ENSATEP00000018760	Small nuclear ribonucleoprotein Sm D2.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	0.983
ENSATEP00000001358	naa38	ENSATEP00000001358	ENSATEP00000001485	Small nuclear ribonucleoprotein Sm D2.	N(alpha)-acetyltransferase 38, NatC auxiliary subunit.	0.993
ENSATEP00000001358	ncbp2	ENSATEP00000001358	ENSATEP00000031397	Small nuclear ribonucleoprotein Sm D2.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.997
ENSATEP00000001358	phf5a	ENSATEP00000001358	ENSATEP00000009240	Small nuclear ribonucleoprotein Sm D2.	PHD finger protein 5A.	0.982
ENSATEP00000001358	phf5a-2	ENSATEP00000001358	ENSATEP00000010594	Small nuclear ribonucleoprotein Sm D2.	PHD finger-like domain-containing protein 5A.	0.982
ENSATEP00000001358	sf3a2	ENSATEP00000001358	ENSATEP00000022253	Small nuclear ribonucleoprotein Sm D2.	Splicing factor 3a, subunit 2.	0.990
ENSATEP00000001358	sf3a3	ENSATEP00000001358	ENSATEP00000012605	Small nuclear ribonucleoprotein Sm D2.	Splicing factor 3a, subunit 3.	0.991
ENSATEP00000001358	sf3b1	ENSATEP00000001358	ENSATEP00000029692	Small nuclear ribonucleoprotein Sm D2.	Splicing factor 3b, subunit 1.	0.988
ENSATEP00000001358	sf3b3	ENSATEP00000001358	ENSATEP00000019703	Small nuclear ribonucleoprotein Sm D2.	Splicing factor 3b, subunit 3.	0.987