15 items (Anabas testudineus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	prpf18	PRP18 pre-mRNA processing factor 18 homolog (yeast). (341 aa)
	ENSATEP00000001358	Small nuclear ribonucleoprotein Sm D2. (120 aa)
	LOC113151674	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	txnl4a	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	LOC113151674-2	Small nuclear ribonucleoprotein E. (92 aa)
	prpf6	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
	snrpb	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	ENSATEP00000014599	Pre-mRNA processing factor 8. (2335 aa)
	txnl4b	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	ddx23	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (806 aa)
	ENSATEP00000029779	Small nuclear ribonucleoprotein Sm D3. (140 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (2136 aa)
	cd2bp2	CD2 (cytoplasmic tail) binding protein 2. (376 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)

Your Current Organism:

Anabas testudineus

NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSATEP00000001358	ENSATEP00000014599	ENSATEP00000001358	ENSATEP00000014599	Small nuclear ribonucleoprotein Sm D2.	Pre-mRNA processing factor 8.	0.997
ENSATEP00000001358	ENSATEP00000029779	ENSATEP00000001358	ENSATEP00000029779	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D3.	0.999
ENSATEP00000001358	LOC113151674	ENSATEP00000001358	ENSATEP00000007497	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
ENSATEP00000001358	LOC113151674-2	ENSATEP00000001358	ENSATEP00000007989	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E.	0.998
ENSATEP00000001358	cd2bp2	ENSATEP00000001358	ENSATEP00000032986	Small nuclear ribonucleoprotein Sm D2.	CD2 (cytoplasmic tail) binding protein 2.	0.735
ENSATEP00000001358	ddx23	ENSATEP00000001358	ENSATEP00000024232	Small nuclear ribonucleoprotein Sm D2.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	0.990
ENSATEP00000001358	prpf18	ENSATEP00000001358	ENSATEP00000000426	Small nuclear ribonucleoprotein Sm D2.	PRP18 pre-mRNA processing factor 18 homolog (yeast).	0.773
ENSATEP00000001358	prpf6	ENSATEP00000001358	ENSATEP00000008086	Small nuclear ribonucleoprotein Sm D2.	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.997
ENSATEP00000001358	snrnp200	ENSATEP00000001358	ENSATEP00000032751	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein 200 (U5).	0.997
ENSATEP00000001358	snrpb	ENSATEP00000001358	ENSATEP00000014083	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein-associated protein.	0.996
ENSATEP00000001358	snrpd1	ENSATEP00000001358	ENSATEP00000020648	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
ENSATEP00000001358	snrpg	ENSATEP00000001358	ENSATEP00000033739	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein G.	0.999
ENSATEP00000001358	txnl4a	ENSATEP00000001358	ENSATEP00000007822	Small nuclear ribonucleoprotein Sm D2.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.966
ENSATEP00000001358	txnl4b	ENSATEP00000001358	ENSATEP00000018120	Small nuclear ribonucleoprotein Sm D2.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.960
ENSATEP00000014599	ENSATEP00000001358	ENSATEP00000014599	ENSATEP00000001358	Pre-mRNA processing factor 8.	Small nuclear ribonucleoprotein Sm D2.	0.997
ENSATEP00000014599	ENSATEP00000029779	ENSATEP00000014599	ENSATEP00000029779	Pre-mRNA processing factor 8.	Small nuclear ribonucleoprotein Sm D3.	0.997
ENSATEP00000014599	LOC113151674	ENSATEP00000014599	ENSATEP00000007497	Pre-mRNA processing factor 8.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.971
ENSATEP00000014599	LOC113151674-2	ENSATEP00000014599	ENSATEP00000007989	Pre-mRNA processing factor 8.	Small nuclear ribonucleoprotein E.	0.971
ENSATEP00000014599	cd2bp2	ENSATEP00000014599	ENSATEP00000032986	Pre-mRNA processing factor 8.	CD2 (cytoplasmic tail) binding protein 2.	0.961
ENSATEP00000014599	ddx23	ENSATEP00000014599	ENSATEP00000024232	Pre-mRNA processing factor 8.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	0.999