(18 nodes) P-body assembly network (Anabas testudineus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC113154169	Uncharacterized protein; Belongs to the DEAD box helicase family. (489 aa)
	lsm3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	lsm4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (152 aa)
	EIF4ENIF1	Eukaryotic translation initiation factor 4E nuclear import factor 1. (961 aa)
	lsm14a	LSM14A mRNA processing body assembly factor b. (440 aa)
	patl1	PAT1 homolog 1, processing body mRNA decay factor. (816 aa)
	ENSATEP00000026969	Ataxin 2. (1055 aa)
	ENSATEP00000028368	PAT1 homolog 2. (616 aa)
	LOC113162250	Nocturnin. (384 aa)
	edc3	Uncharacterized protein. (473 aa)
	ddx6	DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family. (481 aa)
	LOC113168990	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family. (478 aa)
	rc3h1	Ring finger and CCCH-type domains 1b. (1131 aa)
	LOC113167366	Zgc:153119. (310 aa)
	LOC113167366-2	UPF0692 protein C19orf54 homolog. (310 aa)
	LOC113165516	LSM14A mRNA processing body assembly factor a. (498 aa)
	LOC113166427	Enhancer of mRNA decapping 3 homolog (S. cerevisiae). (478 aa)
	ENSATEP00000022493	Nocturnin. (410 aa)

Your Current Organism:

Anabas testudineus

NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF4ENIF1	ENSATEP00000028368	ENSATEP00000016162	ENSATEP00000028368	Eukaryotic translation initiation factor 4E nuclear import factor 1.	PAT1 homolog 2.	0.458
EIF4ENIF1	LOC113154169	ENSATEP00000016162	ENSATEP00000007790	Eukaryotic translation initiation factor 4E nuclear import factor 1.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.948
EIF4ENIF1	LOC113165516	ENSATEP00000016162	ENSATEP00000020068	Eukaryotic translation initiation factor 4E nuclear import factor 1.	LSM14A mRNA processing body assembly factor a.	0.932
EIF4ENIF1	LOC113166427	ENSATEP00000016162	ENSATEP00000022349	Eukaryotic translation initiation factor 4E nuclear import factor 1.	Enhancer of mRNA decapping 3 homolog (S. cerevisiae).	0.465
EIF4ENIF1	LOC113168990	ENSATEP00000016162	ENSATEP00000016305	Eukaryotic translation initiation factor 4E nuclear import factor 1.	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	0.948
EIF4ENIF1	ddx6	ENSATEP00000016162	ENSATEP00000013947	Eukaryotic translation initiation factor 4E nuclear import factor 1.	DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.	0.948
EIF4ENIF1	edc3	ENSATEP00000016162	ENSATEP00000005953	Eukaryotic translation initiation factor 4E nuclear import factor 1.	Uncharacterized protein.	0.465
EIF4ENIF1	lsm14a	ENSATEP00000016162	ENSATEP00000005128	Eukaryotic translation initiation factor 4E nuclear import factor 1.	LSM14A mRNA processing body assembly factor b.	0.932
EIF4ENIF1	patl1	ENSATEP00000016162	ENSATEP00000003116	Eukaryotic translation initiation factor 4E nuclear import factor 1.	PAT1 homolog 1, processing body mRNA decay factor.	0.458
ENSATEP00000022493	ENSATEP00000028368	ENSATEP00000022493	ENSATEP00000028368	Nocturnin.	PAT1 homolog 2.	0.686
ENSATEP00000022493	LOC113154169	ENSATEP00000022493	ENSATEP00000007790	Nocturnin.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.725
ENSATEP00000022493	LOC113166427	ENSATEP00000022493	ENSATEP00000022349	Nocturnin.	Enhancer of mRNA decapping 3 homolog (S. cerevisiae).	0.405
ENSATEP00000022493	LOC113168990	ENSATEP00000022493	ENSATEP00000016305	Nocturnin.	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	0.725
ENSATEP00000022493	ddx6	ENSATEP00000022493	ENSATEP00000013947	Nocturnin.	DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.	0.725
ENSATEP00000022493	edc3	ENSATEP00000022493	ENSATEP00000005953	Nocturnin.	Uncharacterized protein.	0.405
ENSATEP00000022493	patl1	ENSATEP00000022493	ENSATEP00000003116	Nocturnin.	PAT1 homolog 1, processing body mRNA decay factor.	0.686
ENSATEP00000026969	LOC113154169	ENSATEP00000026969	ENSATEP00000007790	Ataxin 2.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.786
ENSATEP00000026969	LOC113165516	ENSATEP00000026969	ENSATEP00000020068	Ataxin 2.	LSM14A mRNA processing body assembly factor a.	0.434
ENSATEP00000026969	LOC113166427	ENSATEP00000026969	ENSATEP00000022349	Ataxin 2.	Enhancer of mRNA decapping 3 homolog (S. cerevisiae).	0.420
ENSATEP00000026969	LOC113168990	ENSATEP00000026969	ENSATEP00000016305	Ataxin 2.	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	0.786