32 items (Anabas testudineus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	snrnp40	Small nuclear ribonucleoprotein 40 (U5). (347 aa)
	prpf18	PRP18 pre-mRNA processing factor 18 homolog (yeast). (341 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	ENSATEP00000001358	Small nuclear ribonucleoprotein Sm D2. (120 aa)
	lsm3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	LOC113151674	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	txnl4a	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	LOC113151674-2	Small nuclear ribonucleoprotein E. (92 aa)
	prpf6	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
	zmat2	Zinc finger, matrin-type 2. (207 aa)
	snrpb	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	ENSATEP00000014599	Pre-mRNA processing factor 8. (2335 aa)
	sart1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (770 aa)
	usp39	Ubiquitin specific peptidase 39. (489 aa)
	lsm2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	txnl4b	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
	lsm6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
	snu13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	LOC113167366	Zgc:153119. (310 aa)
	LOC113167366-2	UPF0692 protein C19orf54 homolog. (310 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	lsm4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (152 aa)
	ddx23	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (806 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (135 aa)
	ENSATEP00000029779	Small nuclear ribonucleoprotein Sm D3. (140 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (2136 aa)
	ENSATEP00000032894	Small nuclear ribonucleoprotein polypeptide F. (93 aa)
	prpf31	PRP31 pre-mRNA processing factor 31 homolog (yeast). (508 aa)
	prpf4	PRP4 pre-mRNA processing factor 4 homolog (yeast). (510 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (75 aa)
	prpf3	PRP3 pre-mRNA processing factor 3 homolog (yeast). (698 aa)

Your Current Organism:

Anabas testudineus

NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSATEP00000001358	ENSATEP00000014599	ENSATEP00000001358	ENSATEP00000014599	Small nuclear ribonucleoprotein Sm D2.	Pre-mRNA processing factor 8.	0.997
ENSATEP00000001358	ENSATEP00000029779	ENSATEP00000001358	ENSATEP00000029779	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D3.	0.999
ENSATEP00000001358	ENSATEP00000032894	ENSATEP00000001358	ENSATEP00000032894	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein polypeptide F.	0.999
ENSATEP00000001358	LOC113151674	ENSATEP00000001358	ENSATEP00000007497	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
ENSATEP00000001358	LOC113151674-2	ENSATEP00000001358	ENSATEP00000007989	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E.	0.998
ENSATEP00000001358	LOC113167366	ENSATEP00000001358	ENSATEP00000019724	Small nuclear ribonucleoprotein Sm D2.	Zgc:153119.	0.989
ENSATEP00000001358	LOC113167366-2	ENSATEP00000001358	ENSATEP00000019903	Small nuclear ribonucleoprotein Sm D2.	UPF0692 protein C19orf54 homolog.	0.989
ENSATEP00000001358	LSM5	ENSATEP00000001358	ENSATEP00000029669	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.994
ENSATEP00000001358	LSM8	ENSATEP00000001358	ENSATEP00000034082	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.994
ENSATEP00000001358	ddx23	ENSATEP00000001358	ENSATEP00000024232	Small nuclear ribonucleoprotein Sm D2.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	0.990
ENSATEP00000001358	eftud2	ENSATEP00000001358	ENSATEP00000000721	Small nuclear ribonucleoprotein Sm D2.	Elongation factor Tu GTP binding domain containing 2.	0.998
ENSATEP00000001358	lsm2	ENSATEP00000001358	ENSATEP00000016336	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
ENSATEP00000001358	lsm3	ENSATEP00000001358	ENSATEP00000007322	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.990
ENSATEP00000001358	lsm4	ENSATEP00000001358	ENSATEP00000023861	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.993
ENSATEP00000001358	lsm6	ENSATEP00000001358	ENSATEP00000018146	Small nuclear ribonucleoprotein Sm D2.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.997
ENSATEP00000001358	lsm7	ENSATEP00000001358	ENSATEP00000012285	Small nuclear ribonucleoprotein Sm D2.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.997
ENSATEP00000001358	prpf18	ENSATEP00000001358	ENSATEP00000000426	Small nuclear ribonucleoprotein Sm D2.	PRP18 pre-mRNA processing factor 18 homolog (yeast).	0.773
ENSATEP00000001358	prpf3	ENSATEP00000001358	ENSATEP00000034327	Small nuclear ribonucleoprotein Sm D2.	PRP3 pre-mRNA processing factor 3 homolog (yeast).	0.984
ENSATEP00000001358	prpf31	ENSATEP00000001358	ENSATEP00000032972	Small nuclear ribonucleoprotein Sm D2.	PRP31 pre-mRNA processing factor 31 homolog (yeast).	0.977
ENSATEP00000001358	prpf4	ENSATEP00000001358	ENSATEP00000033390	Small nuclear ribonucleoprotein Sm D2.	PRP4 pre-mRNA processing factor 4 homolog (yeast).	0.984