40 items (Anabas testudineus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC113151674-2	Small nuclear ribonucleoprotein E. (92 aa)
	LOC113151674	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	lsm3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	ENSATEP00000001358	Small nuclear ribonucleoprotein Sm D2. (120 aa)
	prpf18	PRP18 pre-mRNA processing factor 18 homolog (yeast). (341 aa)
	prpf3	PRP3 pre-mRNA processing factor 3 homolog (yeast). (698 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (75 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	prpf4	PRP4 pre-mRNA processing factor 4 homolog (yeast). (510 aa)
	cd2bp2	CD2 (cytoplasmic tail) binding protein 2. (376 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (2136 aa)
	rnpc3	RNA-binding region (RNP1, RRM) containing 3. (515 aa)
	ENSATEP00000029779	Small nuclear ribonucleoprotein Sm D3. (140 aa)
	sf3b1	Splicing factor 3b, subunit 1. (1314 aa)
	kiaa2026	Bromo domain-containing protein. (2323 aa)
	ddx23	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (806 aa)
	lsm4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (152 aa)
	snrpb2	Small nuclear ribonucleoprotein polypeptide B2. (218 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	LOC113167366-2	UPF0692 protein C19orf54 homolog. (310 aa)
	ENSATEP00000019857	Small nuclear ribonucleoprotein polypeptide A. (223 aa)
	LOC113167366	Zgc:153119. (310 aa)
	ENSATEP00000019714	Small nuclear ribonucleoprotein polypeptide A. (223 aa)
	lsm6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
	txnl4b	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
	ppih	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (177 aa)
	ENSATEP00000017911	Uncharacterized protein. (57 aa)
	ENSATEP00000016610	Small nuclear ribonucleoprotein polypeptide A. (253 aa)
	lsm2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	inpp5d	Inositol polyphosphate-5-phosphatase D. (1101 aa)
	usp39	Ubiquitin specific peptidase 39. (489 aa)
	sart1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (770 aa)
	ENSATEP00000014599	Pre-mRNA processing factor 8. (2335 aa)
	snrpb	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	sf3b5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	ENSATEP00000012737	HIV-1 Tat specific factor 1. (444 aa)
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
	trmt13	tRNA methyltransferase 13 homolog. (471 aa)
	prpf6	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
	txnl4a	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)

Your Current Organism:

Anabas testudineus

NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSATEP00000001358	ENSATEP00000012737	ENSATEP00000001358	ENSATEP00000012737	Small nuclear ribonucleoprotein Sm D2.	HIV-1 Tat specific factor 1.	0.888
ENSATEP00000001358	ENSATEP00000014599	ENSATEP00000001358	ENSATEP00000014599	Small nuclear ribonucleoprotein Sm D2.	Pre-mRNA processing factor 8.	0.997
ENSATEP00000001358	ENSATEP00000016610	ENSATEP00000001358	ENSATEP00000016610	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein polypeptide A.	0.998
ENSATEP00000001358	ENSATEP00000017911	ENSATEP00000001358	ENSATEP00000017911	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.924
ENSATEP00000001358	ENSATEP00000019714	ENSATEP00000001358	ENSATEP00000019714	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein polypeptide A.	0.976
ENSATEP00000001358	ENSATEP00000019857	ENSATEP00000001358	ENSATEP00000019857	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein polypeptide A.	0.976
ENSATEP00000001358	ENSATEP00000029779	ENSATEP00000001358	ENSATEP00000029779	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D3.	0.999
ENSATEP00000001358	LOC113151674	ENSATEP00000001358	ENSATEP00000007497	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
ENSATEP00000001358	LOC113151674-2	ENSATEP00000001358	ENSATEP00000007989	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E.	0.998
ENSATEP00000001358	LOC113167366	ENSATEP00000001358	ENSATEP00000019724	Small nuclear ribonucleoprotein Sm D2.	Zgc:153119.	0.989
ENSATEP00000001358	LOC113167366-2	ENSATEP00000001358	ENSATEP00000019903	Small nuclear ribonucleoprotein Sm D2.	UPF0692 protein C19orf54 homolog.	0.989
ENSATEP00000001358	LSM8	ENSATEP00000001358	ENSATEP00000034082	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.994
ENSATEP00000001358	cd2bp2	ENSATEP00000001358	ENSATEP00000032986	Small nuclear ribonucleoprotein Sm D2.	CD2 (cytoplasmic tail) binding protein 2.	0.735
ENSATEP00000001358	ddx23	ENSATEP00000001358	ENSATEP00000024232	Small nuclear ribonucleoprotein Sm D2.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	0.990
ENSATEP00000001358	lsm2	ENSATEP00000001358	ENSATEP00000016336	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
ENSATEP00000001358	lsm3	ENSATEP00000001358	ENSATEP00000007322	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.990
ENSATEP00000001358	lsm4	ENSATEP00000001358	ENSATEP00000023861	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.993
ENSATEP00000001358	lsm6	ENSATEP00000001358	ENSATEP00000018146	Small nuclear ribonucleoprotein Sm D2.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.997
ENSATEP00000001358	lsm7	ENSATEP00000001358	ENSATEP00000012285	Small nuclear ribonucleoprotein Sm D2.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.997
ENSATEP00000001358	ppih	ENSATEP00000001358	ENSATEP00000017976	Small nuclear ribonucleoprotein Sm D2.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.923