15 items (Anabas testudineus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LSM10	LSM10, U7 small nuclear RNA associated. (135 aa)
	lsm3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (75 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	ENSATEP00000032894	Small nuclear ribonucleoprotein polypeptide F. (93 aa)
	lsm1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
	ENSATEP00000029779	Small nuclear ribonucleoprotein Sm D3. (140 aa)
	LSM14B	LSM family member 14B. (318 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	lsm6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
	snrpb	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	LOC113151700	Cell division cycle 42. (191 aa)
	lsm14a	LSM14A mRNA processing body assembly factor b. (440 aa)
	lsm11	LSM11, U7 small nuclear RNA associated. (322 aa)
	ENSATEP00000001358	Small nuclear ribonucleoprotein Sm D2. (120 aa)

Your Current Organism:

Anabas testudineus

NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSATEP00000001358	ENSATEP00000029779	ENSATEP00000001358	ENSATEP00000029779	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D3.	0.999
ENSATEP00000001358	ENSATEP00000032894	ENSATEP00000001358	ENSATEP00000032894	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein polypeptide F.	0.999
ENSATEP00000001358	LSM10	ENSATEP00000001358	ENSATEP00000008979	Small nuclear ribonucleoprotein Sm D2.	LSM10, U7 small nuclear RNA associated.	0.998
ENSATEP00000001358	LSM8	ENSATEP00000001358	ENSATEP00000034082	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.994
ENSATEP00000001358	lsm1	ENSATEP00000001358	ENSATEP00000032323	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.767
ENSATEP00000001358	lsm11	ENSATEP00000001358	ENSATEP00000001979	Small nuclear ribonucleoprotein Sm D2.	LSM11, U7 small nuclear RNA associated.	0.579
ENSATEP00000001358	lsm3	ENSATEP00000001358	ENSATEP00000007322	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.990
ENSATEP00000001358	lsm6	ENSATEP00000001358	ENSATEP00000018146	Small nuclear ribonucleoprotein Sm D2.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.997
ENSATEP00000001358	snrpb	ENSATEP00000001358	ENSATEP00000014083	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein-associated protein.	0.996
ENSATEP00000001358	snrpd1	ENSATEP00000001358	ENSATEP00000020648	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
ENSATEP00000001358	snrpg	ENSATEP00000001358	ENSATEP00000033739	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein G.	0.999
ENSATEP00000029779	ENSATEP00000001358	ENSATEP00000029779	ENSATEP00000001358	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein Sm D2.	0.999
ENSATEP00000029779	ENSATEP00000032894	ENSATEP00000029779	ENSATEP00000032894	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein polypeptide F.	0.999
ENSATEP00000029779	LSM10	ENSATEP00000029779	ENSATEP00000008979	Small nuclear ribonucleoprotein Sm D3.	LSM10, U7 small nuclear RNA associated.	0.999
ENSATEP00000029779	LSM8	ENSATEP00000029779	ENSATEP00000034082	Small nuclear ribonucleoprotein Sm D3.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.991
ENSATEP00000029779	lsm1	ENSATEP00000029779	ENSATEP00000032323	Small nuclear ribonucleoprotein Sm D3.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.635
ENSATEP00000029779	lsm11	ENSATEP00000029779	ENSATEP00000001979	Small nuclear ribonucleoprotein Sm D3.	LSM11, U7 small nuclear RNA associated.	0.978
ENSATEP00000029779	lsm3	ENSATEP00000029779	ENSATEP00000007322	Small nuclear ribonucleoprotein Sm D3.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.994
ENSATEP00000029779	lsm6	ENSATEP00000029779	ENSATEP00000018146	Small nuclear ribonucleoprotein Sm D3.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.993
ENSATEP00000029779	snrpb	ENSATEP00000029779	ENSATEP00000014083	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein-associated protein.	0.997