52 items (Anabas testudineus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSATEP00000001358	Small nuclear ribonucleoprotein Sm D2. (120 aa)
	nup50	Nucleoporin 50. (475 aa)
	LOC113173839	RAN binding protein 2. (3022 aa)
	ENSATEP00000003045	Survival of motor neuron 1, telomeric. (328 aa)
	ENSATEP00000003165	Nucleoporin 42. (513 aa)
	ddx20	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family. (796 aa)
	ENSATEP00000004391	Translocated promoter region a, nuclear basket protein. (2144 aa)
	ENSATEP00000005337	Chloride channel, nucleotide-sensitive, 1A. (289 aa)
	LOC113151674	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	LOC113151674-2	Small nuclear ribonucleoprotein E. (92 aa)
	WDR77	WD repeat domain 77. (310 aa)
	ENSATEP00000008407	LYN proto-oncogene, Src family tyrosine kinase. (809 aa)
	sec13	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (320 aa)
	prmt5	Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily. (631 aa)
	ENSATEP00000012932	Nucleoporin 88. (454 aa)
	gemin2	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. (280 aa)
	snrpb	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	nup98	Nucleoporin 98. (1840 aa)
	gemin7	Gem (nuclear organelle) associated protein 7. (128 aa)
	ENSATEP00000019002	Nucleoporin 188. (1671 aa)
	gemin5	Gem (nuclear organelle) associated protein 5. (1466 aa)
	nup153	Nucleoporin 153. (1517 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	nup93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (820 aa)
	gemin6	Gem (nuclear organelle) associated protein 6. (179 aa)
	nup210	Nucleoporin 210. (1878 aa)
	NUP54	Nucleoporin 54. (570 aa)
	nup160	Nucleoporin 160. (1391 aa)
	ENSATEP00000023221	Nucleoporin 58. (574 aa)
	nup62	Nsp1_C domain-containing protein. (586 aa)
	rae1	Ribonucleic acid export 1. (368 aa)
	nup205	Nucleoporin 205. (1991 aa)
	nup214	Nup214_FG domain-containing protein. (2016 aa)
	gemin8	Gem (nuclear organelle) associated protein 8. (201 aa)
	ENSATEP00000026679	Translocated promoter region b, nuclear basket protein. (2161 aa)
	aaas	Achalasia, adrenocortical insufficiency, alacrimia. (519 aa)
	nup35	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (294 aa)
	nup155	Nucleoporin 155. (1367 aa)
	ENSATEP00000028783	Gem (nuclear organelle) associated protein 4. (1030 aa)
	ENSATEP00000029779	Small nuclear ribonucleoprotein Sm D3. (140 aa)
	ENSATEP00000030066	Nucleoporin 43. (346 aa)
	ndc1	NDC1 transmembrane nucleoporin. (668 aa)
	snupn	Snurportin 1. (373 aa)
	ENSATEP00000030520	Uncharacterized protein. (128 aa)
	nup133	Nucleoporin 133. (1138 aa)
	ENSATEP00000031522	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (882 aa)
	LOC113170472	POM121 transmembrane nucleoporin. (1160 aa)
	ENSATEP00000032894	Small nuclear ribonucleoprotein polypeptide F. (93 aa)
	nup37	Nucleoporin 37. (386 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (652 aa)
	seh1l	SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family. (383 aa)

Your Current Organism:

Anabas testudineus

NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSATEP00000001358	ENSATEP00000003045	ENSATEP00000001358	ENSATEP00000003045	Small nuclear ribonucleoprotein Sm D2.	Survival of motor neuron 1, telomeric.	0.986
ENSATEP00000001358	ENSATEP00000003165	ENSATEP00000001358	ENSATEP00000003165	Small nuclear ribonucleoprotein Sm D2.	Nucleoporin 42.	0.483
ENSATEP00000001358	ENSATEP00000004391	ENSATEP00000001358	ENSATEP00000004391	Small nuclear ribonucleoprotein Sm D2.	Translocated promoter region a, nuclear basket protein.	0.420
ENSATEP00000001358	ENSATEP00000005337	ENSATEP00000001358	ENSATEP00000005337	Small nuclear ribonucleoprotein Sm D2.	Chloride channel, nucleotide-sensitive, 1A.	0.974
ENSATEP00000001358	ENSATEP00000008407	ENSATEP00000001358	ENSATEP00000008407	Small nuclear ribonucleoprotein Sm D2.	LYN proto-oncogene, Src family tyrosine kinase.	0.984
ENSATEP00000001358	ENSATEP00000023221	ENSATEP00000001358	ENSATEP00000023221	Small nuclear ribonucleoprotein Sm D2.	Nucleoporin 58.	0.531
ENSATEP00000001358	ENSATEP00000026679	ENSATEP00000001358	ENSATEP00000026679	Small nuclear ribonucleoprotein Sm D2.	Translocated promoter region b, nuclear basket protein.	0.420
ENSATEP00000001358	ENSATEP00000028783	ENSATEP00000001358	ENSATEP00000028783	Small nuclear ribonucleoprotein Sm D2.	Gem (nuclear organelle) associated protein 4.	0.771
ENSATEP00000001358	ENSATEP00000029779	ENSATEP00000001358	ENSATEP00000029779	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D3.	0.999
ENSATEP00000001358	ENSATEP00000030066	ENSATEP00000001358	ENSATEP00000030066	Small nuclear ribonucleoprotein Sm D2.	Nucleoporin 43.	0.561
ENSATEP00000001358	ENSATEP00000030520	ENSATEP00000001358	ENSATEP00000030520	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.658
ENSATEP00000001358	ENSATEP00000032894	ENSATEP00000001358	ENSATEP00000032894	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein polypeptide F.	0.999
ENSATEP00000001358	LOC113151674	ENSATEP00000001358	ENSATEP00000007497	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
ENSATEP00000001358	LOC113151674-2	ENSATEP00000001358	ENSATEP00000007989	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E.	0.998
ENSATEP00000001358	LOC113173839	ENSATEP00000001358	ENSATEP00000002396	Small nuclear ribonucleoprotein Sm D2.	RAN binding protein 2.	0.847
ENSATEP00000001358	NUP54	ENSATEP00000001358	ENSATEP00000022165	Small nuclear ribonucleoprotein Sm D2.	Nucleoporin 54.	0.557
ENSATEP00000001358	WDR77	ENSATEP00000001358	ENSATEP00000008109	Small nuclear ribonucleoprotein Sm D2.	WD repeat domain 77.	0.658
ENSATEP00000001358	aaas	ENSATEP00000001358	ENSATEP00000027786	Small nuclear ribonucleoprotein Sm D2.	Achalasia, adrenocortical insufficiency, alacrimia.	0.544
ENSATEP00000001358	ddx20	ENSATEP00000001358	ENSATEP00000004191	Small nuclear ribonucleoprotein Sm D2.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	0.827
ENSATEP00000001358	gemin2	ENSATEP00000001358	ENSATEP00000013797	Small nuclear ribonucleoprotein Sm D2.	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	0.997