STRINGSTRING
GCA_002104455_00087 GCA_002104455_00087 GCA_002104455_00321 GCA_002104455_00321 mrdA mrdA GCA_002104455_00957 GCA_002104455_00957 mpl mpl GCA_002104455_01426 GCA_002104455_01426 uppP uppP GCA_002104455_02329 GCA_002104455_02329 murB murB GCA_002104455_02430 GCA_002104455_02430 uppS uppS murA murA ftsI ftsI murE murE murF murF mraY mraY murD murD murG murG murC murC ddl ddl GCA_002104455_02984 GCA_002104455_02984 GCA_002104455_03380 GCA_002104455_03380 GCA_002104455_03545 GCA_002104455_03545
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GCA_002104455_00087Unannotated protein. (209 aa)
GCA_002104455_00321Unannotated protein; Belongs to the peptidase S11 family. (395 aa)
mrdAUnannotated protein; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. (659 aa)
GCA_002104455_00957Unannotated protein. (192 aa)
mplUnannotated protein; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily. (458 aa)
GCA_002104455_01426Unannotated protein. (374 aa)
uppPUnannotated protein; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. (266 aa)
GCA_002104455_02329Unannotated protein. (352 aa)
murBUnannotated protein; Cell wall formation. (343 aa)
GCA_002104455_02430Unannotated protein. (842 aa)
uppSUnannotated protein; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with (2E,6E)-farnesyl diphosphate (E,E-FPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E)-undecaprenyl diphosphate (di- trans,octa-cis-UPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide. (255 aa)
murAUnannotated protein; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. (420 aa)
ftsIUnannotated protein; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. (584 aa)
murEUnannotated protein; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. (529 aa)
murFUnannotated protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. (466 aa)
mraYUnannotated protein; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. (360 aa)
murDUnannotated protein; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. (464 aa)
murGUnannotated protein; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. (368 aa)
murCUnannotated protein; Cell wall formation; Belongs to the MurCDEF family. (490 aa)
ddlUnannotated protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. (311 aa)
GCA_002104455_02984Unannotated protein. (195 aa)
GCA_002104455_03380Unannotated protein; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). (787 aa)
GCA_002104455_03545Unannotated protein. (226 aa)
Your Current Organism:
Colwellia chukchiensis
NCBI taxonomy Id: 641665
Other names: C. chukchiensis, CGMCC 1.9127, Colwellia chukchiensis Yu et al. 2011, Colwellia sp. BCw111, DSM 22576, LMG 25329, LMG:25329, strain BCw111
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