STRINGSTRING
coaD coaD Daes_0011 Daes_0011 Daes_0071 Daes_0071 Daes_0121 Daes_0121 argS argS cysS cysS Daes_0693 Daes_0693 Daes_0700 Daes_0700 Daes_0715 Daes_0715 Daes_0716 Daes_0716 valS valS Daes_0785 Daes_0785 Daes_0857 Daes_0857 Daes_0874 Daes_0874 panC panC metG metG argG argG Daes_1369 Daes_1369 tilS tilS Daes_1584 Daes_1584 ileS ileS Daes_1977 Daes_1977 Daes_2308 Daes_2308 mnmA mnmA Daes_2350 Daes_2350 Daes_2376 Daes_2376 Daes_2444 Daes_2444 guaA guaA nadD nadD Daes_2474 Daes_2474 Daes_2639 Daes_2639 Daes_2666 Daes_2666 Daes_2667 Daes_2667 Daes_2732 Daes_2732 gltX gltX leuS leuS glnS glnS Daes_3019 Daes_3019 Daes_3035 Daes_3035 Daes_3075 Daes_3075 tyrS tyrS nadE nadE Daes_3285 Daes_3285 Daes_3309 Daes_3309
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
coaDPantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. (172 aa)
Daes_0011PFAM: asparagine synthase; KEGG: mta:Moth_2511 hypothetical protein. (258 aa)
Daes_0071KEGG: dsa:Desal_0960 deoxyribodipyrimidine photolyase; TIGRFAM: deoxyribodipyrimidine photolyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein. (450 aa)
Daes_0121PFAM: UspA domain-containing protein; KEGG: dvm:DvMF_0804 UspA domain protein. (136 aa)
argSTIGRFAM: arginyl-tRNA synthetase; KEGG: dsa:Desal_3690 arginyl-tRNA synthetase. (547 aa)
cysSSMART: Cysteinyl-tRNA synthetase class Ia DALR; TIGRFAM: cysteinyl-tRNA synthetase; KEGG: dsa:Desal_3356 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Cysteinyl-tRNA synthetase class Ia DALR; Belongs to the class-I aminoacyl-tRNA synthetase family. (485 aa)
Daes_0693PFAM: UspA domain-containing protein; KEGG: drt:Dret_1288 UspA domain protein. (321 aa)
Daes_0700PFAM: asparagine synthase; glutamine amidotransferase class-II; manually curated; KEGG: mag:amb0119 asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing). (631 aa)
Daes_0715TIGRFAM: asparagine synthase (glutamine-hydrolyzing); KEGG: nde:NIDE2699 asparagine synthase; PFAM: asparagine synthase. (630 aa)
Daes_0716Manually curated; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); KEGG: nde:NIDE2699 asparagine synthase; PFAM: asparagine synthase; glutamine amidotransferase class-II. (626 aa)
valSvalyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. (888 aa)
Daes_0785PFAM: UspA domain-containing protein; KEGG: dba:Dbac_2342 UspA domain protein. (300 aa)
Daes_0857PFAM: UspA domain-containing protein; KEGG: drt:Dret_0415 UspA domain protein. (296 aa)
Daes_0874TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: dsa:Desal_2931 riboflavin biosynthesis protein RibF; SMART: Riboflavin kinase; Belongs to the ribF family. (332 aa)
panCPantoate/beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. (282 aa)
metGmethionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. (658 aa)
argGTIGRFAM: argininosuccinate synthase; KEGG: dsa:Desal_1785 argininosuccinate synthase; PFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. (410 aa)
Daes_1369PFAM: PP-loop domain protein; KEGG: dsa:Desal_2590 PP-loop domain protein; Belongs to the TtcA family. (249 aa)
tilStRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. (336 aa)
Daes_1584KEGG: deg:DehalGT_0233 hypothetical protein. (700 aa)
ileSisoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. (942 aa)
Daes_1977Cytidyltransferase-related domain protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family. (507 aa)
Daes_2308PFAM: UspA domain-containing protein; KEGG: drt:Dret_1199 bile acid:sodium symporter. (167 aa)
mnmAtRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. (349 aa)
Daes_2350KEGG: dsa:Desal_2862 cysteine synthase; TIGRFAM: cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Cysteinyl-tRNA synthetase class Ia. (771 aa)
Daes_2376PFAM: phosphoadenosine phosphosulfate reductase; KEGG: dsa:Desal_0732 phosphoadenosine phosphosulfate reductase. (225 aa)
Daes_2444PFAM: PP-loop domain protein; KEGG: dde:Dde_3611 hypothetical protein; Belongs to the TtcA family. (309 aa)
guaAGMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. (514 aa)
nadDNicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (218 aa)
Daes_2474TIGRFAM: tryptophanyl-tRNA synthetase; KEGG: dsa:Desal_1108 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib. (327 aa)
Daes_2639PFAM: UspA domain-containing protein; KEGG: dde:Dde_3712 universal stress protein. (308 aa)
Daes_2666KEGG: dma:DMR_42730 electron transfer flavoprotein beta-subunit domain protein; PFAM: Electron transfer flavoprotein alpha/beta-subunit; SMART: Electron transfer flavoprotein alpha/beta-subunit. (337 aa)
Daes_2667PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: dma:DMR_42720 hypothetical protein. (268 aa)
Daes_2732KEGG: dma:DMR_43250 hypothetical protein. (354 aa)
gltXglutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). (465 aa)
leuSKEGG: dsa:Desal_0650 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (833 aa)
glnSKEGG: dvm:DvMF_1485 glutaminyl-tRNA synthetase; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain. (591 aa)
Daes_3019PFAM: UspA domain-containing protein; KEGG: dsa:Desal_0180 UspA domain protein. (146 aa)
Daes_3035TIGRFAM: sulfate adenylyltransferase; KEGG: dde:Dde_2265 sulfate adenylyltransferase; PFAM: ATP-sulfurylase. (426 aa)
Daes_3075rfaE bifunctional protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. (167 aa)
tyrStyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. (427 aa)
nadENAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. (556 aa)
Daes_3285PFAM: UspA domain-containing protein; KEGG: dsa:Desal_2322 UspA domain protein. (140 aa)
Daes_3309KEGG: dsa:Desal_3603 asparagine synthase (glutamine-hydrolyzing); TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase. (654 aa)
Your Current Organism:
Pseudodesulfovibrio aespoeensis
NCBI taxonomy Id: 643562
Other names: Desulfovibrio aespoeensis Aspo-2, Desulfovibrio aespoeensis DSM 10631, P. aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis DSM 10631
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