STRINGSTRING
Daes_0687 Daes_0687 Daes_0705 Daes_0705 Daes_0872 Daes_0872 Daes_0891 Daes_0891 Daes_0892 Daes_0892 Daes_0894 Daes_0894 proC proC Daes_2101 Daes_2101 Daes_2212 Daes_2212 proA proA Daes_2597 Daes_2597 proB proB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Daes_0687PFAM: aminotransferase class I and II; KEGG: dsa:Desal_3407 aspartate aminotransferase. (396 aa)
Daes_0705KEGG: pna:Pnap_2465 proline dehydrogenase; PFAM: Proline dehydrogenase. (318 aa)
Daes_0872PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: msv:Mesil_0745 agmatinase; Belongs to the arginase family. (279 aa)
Daes_0891Agmatinase; KEGG: dvu:DVU0421 agmatinase, putative; TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family. (285 aa)
Daes_0892Carboxynorspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily. (396 aa)
Daes_0894Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. (637 aa)
proCPyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. (265 aa)
Daes_2101KEGG: dba:Dbac_2936 cytosine deaminase; PFAM: Amidohydrolase 3. (422 aa)
Daes_2212Aldehyde Dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. (1004 aa)
proAGamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. (419 aa)
Daes_2597PFAM: Pyruvoyl-dependent arginine decarboxylase; KEGG: sun:SUN_0883 phosphatidylserine decarboxylase. (219 aa)
proBGlutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. (396 aa)
Your Current Organism:
Pseudodesulfovibrio aespoeensis
NCBI taxonomy Id: 643562
Other names: Desulfovibrio aespoeensis Aspo-2, Desulfovibrio aespoeensis DSM 10631, P. aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis DSM 10631
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