(5 nodes) Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, and Processing of Intronless Pre-mRNAs network (Komagataella phaffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C4QWH4_KOMPG	Smg4_UPF3 domain-containing protein. (321 aa)
	C4R019_KOMPG	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM). (293 aa)
	C4R0L1_KOMPG	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM). (209 aa)
	C4R568_KOMPG	Regulator of nonsense transcripts 1. (941 aa)
	C4R989_KOMPG	Nonsense-mediated mRNA decay protein 2. (953 aa)

Your Current Organism:

Komagataella phaffii

NCBI taxonomy Id: 644223
Other names: K. phaffii GS115, Komagataella phaffii GS115

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C4QWH4_KOMPG	C4R019_KOMPG	C4QWH4	C4R019	Smg4_UPF3 domain-containing protein.	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	0.782
C4QWH4_KOMPG	C4R0L1_KOMPG	C4QWH4	C4R0L1	Smg4_UPF3 domain-containing protein.	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	0.782
C4QWH4_KOMPG	C4R568_KOMPG	C4QWH4	C4R568	Smg4_UPF3 domain-containing protein.	Regulator of nonsense transcripts 1.	0.999
C4QWH4_KOMPG	C4R989_KOMPG	C4QWH4	C4R989	Smg4_UPF3 domain-containing protein.	Nonsense-mediated mRNA decay protein 2.	0.999
C4R019_KOMPG	C4QWH4_KOMPG	C4R019	C4QWH4	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	Smg4_UPF3 domain-containing protein.	0.782
C4R019_KOMPG	C4R0L1_KOMPG	C4R019	C4R0L1	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	0.909
C4R019_KOMPG	C4R568_KOMPG	C4R019	C4R568	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	Regulator of nonsense transcripts 1.	0.659
C4R019_KOMPG	C4R989_KOMPG	C4R019	C4R989	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	Nonsense-mediated mRNA decay protein 2.	0.833
C4R0L1_KOMPG	C4QWH4_KOMPG	C4R0L1	C4QWH4	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	Smg4_UPF3 domain-containing protein.	0.782
C4R0L1_KOMPG	C4R019_KOMPG	C4R0L1	C4R019	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	0.909
C4R0L1_KOMPG	C4R568_KOMPG	C4R0L1	C4R568	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	Regulator of nonsense transcripts 1.	0.659
C4R0L1_KOMPG	C4R989_KOMPG	C4R0L1	C4R989	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	Nonsense-mediated mRNA decay protein 2.	0.833
C4R568_KOMPG	C4QWH4_KOMPG	C4R568	C4QWH4	Regulator of nonsense transcripts 1.	Smg4_UPF3 domain-containing protein.	0.999
C4R568_KOMPG	C4R019_KOMPG	C4R568	C4R019	Regulator of nonsense transcripts 1.	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	0.659
C4R568_KOMPG	C4R0L1_KOMPG	C4R568	C4R0L1	Regulator of nonsense transcripts 1.	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	0.659
C4R568_KOMPG	C4R989_KOMPG	C4R568	C4R989	Regulator of nonsense transcripts 1.	Nonsense-mediated mRNA decay protein 2.	0.999
C4R989_KOMPG	C4QWH4_KOMPG	C4R989	C4QWH4	Nonsense-mediated mRNA decay protein 2.	Smg4_UPF3 domain-containing protein.	0.999
C4R989_KOMPG	C4R019_KOMPG	C4R989	C4R019	Nonsense-mediated mRNA decay protein 2.	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	0.833
C4R989_KOMPG	C4R0L1_KOMPG	C4R989	C4R0L1	Nonsense-mediated mRNA decay protein 2.	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	0.833
C4R989_KOMPG	C4R568_KOMPG	C4R989	C4R568	Nonsense-mediated mRNA decay protein 2.	Regulator of nonsense transcripts 1.	0.999