STRINGSTRING
Deba_0068 Deba_0068 Deba_0428 Deba_0428 Deba_0466 Deba_0466 Deba_0774 Deba_0774 truA truA Deba_0965 Deba_0965 Deba_1371 Deba_1371 Deba_1533 Deba_1533 Deba_2121 Deba_2121 Deba_2900 Deba_2900 Deba_3106 Deba_3106 Deba_3293 Deba_3293
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Deba_0068Metallo-beta-lactamase family protein; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: chy:CHY_0600 metallo-beta-lactamase family protein; SPTR: Q3AEH8 Metallo-beta-lactamase family protein; PFAM: Metallo-beta-lactamase superfamily. (274 aa)
Deba_0428COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sat:SYN_02851 Zn-dependent hydrolase; SPTR: Q2LSY9 Zn-dependent hydrolase including glyoxylases; PFAM: Metallo-beta-lactamase superfamily. (217 aa)
Deba_0466Beta-lactamase domain-containing protein; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: dol:Dole_2556 beta-lactamase domain-containing protein; SPTR: A8ZWM9 Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily. (323 aa)
Deba_0774Protein of unknown function DUF2088; COGs: COG3875 conserved hypothetical protein; InterPro IPR018657; KEGG: afu:AF0049 hypothetical protein; PFAM: Protein of unknown function DUF2088; SPTR: O30187 Putative uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2088). (420 aa)
truAtRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (279 aa)
Deba_0965COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sat:SYN_02143 Zn-dependent hydrolases; SPTR: Q2LSA2 Zn-dependent hydrolases; PFAM: Metallo-beta-lactamase superfamily. (220 aa)
Deba_1371FAD linked oxidase domain protein; COGs: COG0277 FAD/FMN-containing dehydrogenase; InterProIPR006094:IPR004113:IPR016166:IPR016167:IPR 016168:IPR016164; KEGG: dol:Dole_0769 FAD linked oxidase domain-containing protein; PFAM: FAD linked oxidase domain protein; SPTR: A8ZVB8 FAD linked oxidase domain protein; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain. (459 aa)
Deba_1533Rhodanese domain protein; InterPro IPR001763; KEGG: dma:DMR_29550 rhodanese-like domain protein; SMART: Rhodanese domain protein; SPTR: C4XHS2 Rhodanese-like domain protein; PFAM: Rhodanese-like domain. (210 aa)
Deba_2121COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: mem:Memar_2456 beta-lactamase domain-containing protein; SPTR: A3CYC7 Beta-lactamase domain protein; manually curated; PFAM: Metallo-beta-lactamase superfamily. (566 aa)
Deba_2900KEGG: dma:DMR_04640 hypothetical protein; SPTR: C4XHZ3 Putative uncharacterized protein. (145 aa)
Deba_3106Beta-lactamase domain-containing protein; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sfu:Sfum_1732 beta-lactamase domain-containing protein; SPTR: Q1NSR0 Beta-lactamase-like; PFAM: Metallo-beta-lactamase superfamily. (211 aa)
Deba_3293Beta-lactamase domain protein; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: dal:Dalk_3118 beta-lactamase domain protein; SPTR: B8FBQ5 Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily. (296 aa)
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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