(63 nodes) Mixed, incl. Alanine, aspartate and glutamate metabolism, and O2/CO2 exchange in erythrocytes network (Gaeumannomyces tritici)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GGTG_00049	Uncharacterized protein. (551 aa)
	GGTG_00268	Dihydroorotate dehydrogenase (fumarate); Catalyzes the conversion of dihydroorotate to orotate with fumarate as the electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily. (353 aa)
	GGTG_00651	Asparagine synthetase. (582 aa)
	GGTG_00674	Amidohydrolase 2; Belongs to the glutamine synthetase family. (901 aa)
	GGTG_00753	Amidase domain-containing protein. (611 aa)
	GGTG_00823	Lactamase_B domain-containing protein. (402 aa)
	GGTG_00867	Cytochrome b5; Belongs to the cytochrome b5 family. (173 aa)
	GGTG_00936	Purine permease. (610 aa)
	GGTG_01052	Uncharacterized protein. (209 aa)
	GGTG_01354	Uncharacterized protein. (175 aa)
	GGTG_02123	Uncharacterized protein. (199 aa)
	GGTG_02379	Uncharacterized protein. (546 aa)
	GGTG_02761	Carbamoyl-phosphate synthase subunit arginine-specific small. (470 aa)
	GGTG_02789	NADPH:adrenodoxin oxidoreductase, mitochondrial. (559 aa)
	GGTG_02894	Orotate phosphoribosyltransferase. (235 aa)
	GGTG_03236	Uncharacterized protein. (477 aa)
	GGTG_03587	Cyanide hydratase; Catalyzes the hydration of cyanide to formamide. Degradation of cyanide may be important for plant pathogenic fungi in infection of cyanogenic plants; Belongs to the carbon-nitrogen hydrolase superfamily. Nitrilase family. (368 aa)
	GGTG_04033	Amidase domain-containing protein. (619 aa)
	GGTG_04181	Uncharacterized protein. (411 aa)
	GGTG_04183	Glutamate synthase. (2115 aa)
	GGTG_04591	Zn(2)-C6 fungal-type domain-containing protein. (876 aa)
	GGTG_05399	Glutamine amidotransferase type-2 domain-containing protein. (556 aa)
	GGTG_05900	Asparaginyl-tRNA synthetase. (609 aa)
	GGTG_05948	Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily. (646 aa)
	GGTG_06214	Glutamine synthetase. (356 aa)
	GGTG_06871	Cholesterol oxidase. (1510 aa)
	GGTG_06916	Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. (278 aa)
	GGTG_07007	Uncharacterized protein. (232 aa)
	GGTG_07396	Glutamyl-tRNA(Gln) amidotransferase subunit A. (620 aa)
	GGTG_07399	Uncharacterized protein. (241 aa)
	GGTG_07446	Uncharacterized protein. (216 aa)
	GGTG_07447	Uncharacterized protein. (196 aa)
	GGTG_07463	Amidase domain-containing protein. (554 aa)
	GGTG_07479	CN hydrolase domain-containing protein. (346 aa)
	GGTG_07895	Uncharacterized protein. (378 aa)
	GGTG_07896	FAD-binding FR-type domain-containing protein. (497 aa)
	GGTG_07932	L-asparaginase. (557 aa)
	GGTG_08083	Alpha-glucuronidase; Alpha-glucuronidase involved in the hydrolysis of xylan, a major structural heterogeneous polysaccharide found in plant biomass representing the second most abundant polysaccharide in the biosphere, after cellulose. Releases 4-O-methylglucuronic acid from xylan. Belongs to the glycosyl hydrolase 67 family. (847 aa)
	GGTG_08132	Asparaginyl-tRNA synthetase. (586 aa)
	GGTG_08272	Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the amidase family. GatA subfamily. (583 aa)
	GGTG_08352	NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. (361 aa)
	GGTG_08393	Got1 family protein. (139 aa)
	GGTG_08414	PyrABCN. (2242 aa)
	GGTG_08665	Uncharacterized protein. (237 aa)
	GGTG_08720	L-asparaginase 1. (490 aa)
	GGTG_08982	Chitin deacetylase 1. (267 aa)
	GGTG_09017	Glutamine synthetase. (361 aa)
	GGTG_09030	Amidase domain-containing protein. (398 aa)
	GGTG_09094	Uncharacterized protein. (531 aa)
	GGTG_09124	Glutamine amidotransferase type-2 domain-containing protein. (661 aa)
	GGTG_09128	Uncharacterized protein. (238 aa)
	GGTG_09482	NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. (309 aa)
	GGTG_09652	Uncharacterized protein. (1183 aa)
	GGTG_09808	Putidaredoxin reductase. (590 aa)
	GGTG_10431	Amidase domain-containing protein. (636 aa)
	GGTG_10878	OMPdecase domain-containing protein. (154 aa)
	GGTG_11447	Dihydroorotase. (361 aa)
	GGTG_11613	Uncharacterized protein. (348 aa)
	GGTG_11905	Zn(2)-C6 fungal-type domain-containing protein. (840 aa)
	GGTG_12109	Zn(2)-C6 fungal-type domain-containing protein. (815 aa)
	GGTG_12739	C6 zinc finger domain-containing protein. (809 aa)
	GGTG_13094	NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. (331 aa)
	GGTG_14059	Glutamine synthetase; Belongs to the glutamine synthetase family. (574 aa)

Your Current Organism:

Gaeumannomyces tritici

NCBI taxonomy Id: 644352
Other names: G. tritici R3-111a-1, Gaeumannomyces graminis var. tritici R3-111a-1, Gaeumannomyces tritici R3-111a-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GGTG_00049	GGTG_00268	J3NFK3	J3NG75	Uncharacterized protein.	Dihydroorotate dehydrogenase (fumarate); Catalyzes the conversion of dihydroorotate to orotate with fumarate as the electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily.	0.888
GGTG_00049	GGTG_00674	J3NFK3	J3NHD7	Uncharacterized protein.	Amidohydrolase 2; Belongs to the glutamine synthetase family.	0.407
GGTG_00049	GGTG_00823	J3NFK3	J3NHT6	Uncharacterized protein.	Lactamase_B domain-containing protein.	0.427
GGTG_00049	GGTG_00867	J3NFK3	J3NHY1	Uncharacterized protein.	Cytochrome b5; Belongs to the cytochrome b5 family.	0.504
GGTG_00049	GGTG_00936	J3NFK3	J3NI53	Uncharacterized protein.	Purine permease.	0.478
GGTG_00049	GGTG_02761	J3NFK3	J3NNA5	Uncharacterized protein.	Carbamoyl-phosphate synthase subunit arginine-specific small.	0.682
GGTG_00049	GGTG_02789	J3NFK3	J3NND3	Uncharacterized protein.	NADPH:adrenodoxin oxidoreductase, mitochondrial.	0.801
GGTG_00049	GGTG_02894	J3NFK3	J3NNN7	Uncharacterized protein.	Orotate phosphoribosyltransferase.	0.612
GGTG_00049	GGTG_04183	J3NFK3	J3NSD7	Uncharacterized protein.	Glutamate synthase.	0.410
GGTG_00049	GGTG_04591	J3NFK3	J3NTJ1	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.612
GGTG_00049	GGTG_05948	J3NFK3	J3NXE2	Uncharacterized protein.	Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.	0.540
GGTG_00049	GGTG_06214	J3NFK3	J3NY60	Uncharacterized protein.	Glutamine synthetase.	0.407
GGTG_00049	GGTG_06916	J3NFK3	J3P069	Uncharacterized protein.	Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family.	0.612
GGTG_00049	GGTG_07446	J3NFK3	J3P1P8	Uncharacterized protein.	Uncharacterized protein.	0.642
GGTG_00049	GGTG_07447	J3NFK3	J3P1P9	Uncharacterized protein.	Uncharacterized protein.	0.642
GGTG_00049	GGTG_08393	J3NFK3	J3P4F6	Uncharacterized protein.	Got1 family protein.	0.779
GGTG_00049	GGTG_08414	J3NFK3	J3P4H7	Uncharacterized protein.	PyrABCN.	0.682
GGTG_00049	GGTG_09017	J3NFK3	J3P676	Uncharacterized protein.	Glutamine synthetase.	0.407
GGTG_00049	GGTG_09094	J3NFK3	J3P6F4	Uncharacterized protein.	Uncharacterized protein.	0.888
GGTG_00049	GGTG_09652	J3NFK3	J3P814	Uncharacterized protein.	Uncharacterized protein.	0.682