(43 nodes) Fatty acid elongation network (Gaeumannomyces tritici)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GGTG_07512	Enoyl-CoA hydratase/isomerase. (278 aa)
	GGTG_08086	Elongation of fatty acids protein. (459 aa)
	GGTG_08983	Zn(2)-C6 fungal-type domain-containing protein. (150 aa)
	GGTG_09189	4HBT domain-containing protein. (220 aa)
	GGTG_10378	Uncharacterized protein. (175 aa)
	GGTG_10385	Type-1 protein geranylgeranyltransferase subunit beta. (506 aa)
	GGTG_10404	IQ calmodulin-binding domain-containing protein domain-containing protein. (1055 aa)
	GGTG_11211	Enoyl reductase TSC13. (328 aa)
	GGTG_11767	Trans-2-enoyl-CoA reductase. (423 aa)
	GGTG_12305	Palmitoyl-protein thioesterase 1. (330 aa)
	GGTG_13483	BZIP domain-containing protein. (199 aa)
	GGTG_13850	APH domain-containing protein. (359 aa)
	GGTG_14197	Uncharacterized protein. (394 aa)
	GGTG_14345	Uncharacterized protein. (233 aa)
	GGTG_14346	Uncharacterized protein. (377 aa)
	GGTG_14381	Uncharacterized protein. (235 aa)
	GGTG_14437	Uncharacterized protein. (171 aa)
	GGTG_07090	Elongation of fatty acids protein. (348 aa)
	GGTG_07046	BZIP domain-containing protein. (238 aa)
	GGTG_06710	Uncharacterized protein. (398 aa)
	GGTG_06485	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (401 aa)
	GGTG_04737	APH domain-containing protein. (332 aa)
	GGTG_04672	Uncharacterized protein. (319 aa)
	GGTG_04663	BZIP domain-containing protein. (357 aa)
	GGTG_04602	Uncharacterized protein. (702 aa)
	GGTG_04402	APH domain-containing protein. (356 aa)
	GGTG_03930	APH domain-containing protein. (445 aa)
	GGTG_03887	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase; Catalyzes the third of the four reactions of the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids/VLCFAs per cycle. This enzyme catalyzes the dehydration of the 3-hydroxyacyl-CoA intermediate into trans-2,3-enoyl-CoA, within each cycle of fatty acid elongation. Thereby, it participates to the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors [...] (226 aa)
	GGTG_03873	Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (291 aa)
	GGTG_03815	PKS_ER domain-containing protein. (389 aa)
	GGTG_03814	Uncharacterized protein. (217 aa)
	GGTG_03439	Very-long-chain 3-oxoacyl-CoA reductase; Component of the microsomal membrane bound fatty acid elongation system, which produces the 26-carbon very long-chain fatty acids (VLCFA) from palmitate. Catalyzes the reduction of the 3- ketoacyl-CoA intermediate that is formed in each cycle of fatty acid elongation. VLCFAs serve as precursors for ceramide and sphingolipids. (333 aa)
	GGTG_03375	4HBT domain-containing protein. (217 aa)
	GGTG_01928	Uncharacterized protein. (1446 aa)
	GGTG_01855	APH domain-containing protein. (242 aa)
	GGTG_01269	4HBT domain-containing protein. (301 aa)
	GGTG_00856	BZIP domain-containing protein. (582 aa)
	GGTG_00742	Uncharacterized protein. (448 aa)
	GGTG_00740	Uncharacterized protein. (178 aa)
	GGTG_00739	Uncharacterized protein. (465 aa)
	GGTG_00738	HET domain-containing protein. (678 aa)
	GGTG_00737	HET domain-containing protein. (533 aa)
	GGTG_00736	HET domain-containing protein. (588 aa)

Your Current Organism:

Gaeumannomyces tritici

NCBI taxonomy Id: 644352
Other names: G. tritici R3-111a-1, Gaeumannomyces graminis var. tritici R3-111a-1, Gaeumannomyces tritici R3-111a-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GGTG_00736	GGTG_03439	J3NHJ9	J3NQ82	HET domain-containing protein.	Very-long-chain 3-oxoacyl-CoA reductase; Component of the microsomal membrane bound fatty acid elongation system, which produces the 26-carbon very long-chain fatty acids (VLCFA) from palmitate. Catalyzes the reduction of the 3- ketoacyl-CoA intermediate that is formed in each cycle of fatty acid elongation. VLCFAs serve as precursors for ceramide and sphingolipids.	0.566
GGTG_00736	GGTG_06485	J3NHJ9	J3NYY4	HET domain-containing protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.566
GGTG_00736	GGTG_06710	J3NHJ9	J3NZL2	HET domain-containing protein.	Uncharacterized protein.	0.566
GGTG_00736	GGTG_10378	J3NHJ9	J3PA52	HET domain-containing protein.	Uncharacterized protein.	0.566
GGTG_00736	GGTG_11211	J3NHJ9	J3PCJ0	HET domain-containing protein.	Enoyl reductase TSC13.	0.787
GGTG_00737	GGTG_03439	J3NHK0	J3NQ82	HET domain-containing protein.	Very-long-chain 3-oxoacyl-CoA reductase; Component of the microsomal membrane bound fatty acid elongation system, which produces the 26-carbon very long-chain fatty acids (VLCFA) from palmitate. Catalyzes the reduction of the 3- ketoacyl-CoA intermediate that is formed in each cycle of fatty acid elongation. VLCFAs serve as precursors for ceramide and sphingolipids.	0.566
GGTG_00737	GGTG_06485	J3NHK0	J3NYY4	HET domain-containing protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.566
GGTG_00737	GGTG_06710	J3NHK0	J3NZL2	HET domain-containing protein.	Uncharacterized protein.	0.566
GGTG_00737	GGTG_10378	J3NHK0	J3PA52	HET domain-containing protein.	Uncharacterized protein.	0.566
GGTG_00737	GGTG_11211	J3NHK0	J3PCJ0	HET domain-containing protein.	Enoyl reductase TSC13.	0.787
GGTG_00738	GGTG_03439	J3NHK1	J3NQ82	HET domain-containing protein.	Very-long-chain 3-oxoacyl-CoA reductase; Component of the microsomal membrane bound fatty acid elongation system, which produces the 26-carbon very long-chain fatty acids (VLCFA) from palmitate. Catalyzes the reduction of the 3- ketoacyl-CoA intermediate that is formed in each cycle of fatty acid elongation. VLCFAs serve as precursors for ceramide and sphingolipids.	0.566
GGTG_00738	GGTG_06485	J3NHK1	J3NYY4	HET domain-containing protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.566
GGTG_00738	GGTG_06710	J3NHK1	J3NZL2	HET domain-containing protein.	Uncharacterized protein.	0.566
GGTG_00738	GGTG_10378	J3NHK1	J3PA52	HET domain-containing protein.	Uncharacterized protein.	0.566
GGTG_00738	GGTG_11211	J3NHK1	J3PCJ0	HET domain-containing protein.	Enoyl reductase TSC13.	0.787
GGTG_00739	GGTG_03439	J3NHK2	J3NQ82	Uncharacterized protein.	Very-long-chain 3-oxoacyl-CoA reductase; Component of the microsomal membrane bound fatty acid elongation system, which produces the 26-carbon very long-chain fatty acids (VLCFA) from palmitate. Catalyzes the reduction of the 3- ketoacyl-CoA intermediate that is formed in each cycle of fatty acid elongation. VLCFAs serve as precursors for ceramide and sphingolipids.	0.566
GGTG_00739	GGTG_06485	J3NHK2	J3NYY4	Uncharacterized protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.566
GGTG_00739	GGTG_06710	J3NHK2	J3NZL2	Uncharacterized protein.	Uncharacterized protein.	0.566
GGTG_00739	GGTG_10378	J3NHK2	J3PA52	Uncharacterized protein.	Uncharacterized protein.	0.566
GGTG_00739	GGTG_11211	J3NHK2	J3PCJ0	Uncharacterized protein.	Enoyl reductase TSC13.	0.787