(41 nodes) RNA polymerase network (Gaeumannomyces tritici)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GGTG_01635	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1765 aa)
	GGTG_01607	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1240 aa)
	GGTG_01448	Uncharacterized protein. (170 aa)
	GGTG_00958	Transcription elongation factor S-II. (295 aa)
	GGTG_00572	RBR-type E3 ubiquitin transferase. (768 aa)
	GGTG_09702	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1461 aa)
	GGTG_09739	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1278 aa)
	GGTG_10089	DNA-directed RNA polymerase N/8 kDa subunit. (77 aa)
	GGTG_10304	Uncharacterized protein. (561 aa)
	GGTG_10361	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1726 aa)
	GGTG_10446	Endonuclease/exonuclease/phosphatase. (328 aa)
	GGTG_10739	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1158 aa)
	GGTG_10783	Uncharacterized protein. (561 aa)
	GGTG_10796	Diphthamide biosynthesis protein 3. (89 aa)
	GGTG_11281	Uncharacterized protein. (864 aa)
	GGTG_11287	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (577 aa)
	GGTG_11298	DNA-directed RNA polymerase II subunit RPB3. (340 aa)
	GGTG_11367	DNA-directed RNA polymerase III polypeptide. (209 aa)
	GGTG_12744	RPOL9 domain-containing protein. (277 aa)
	GGTG_13209	Uncharacterized protein. (509 aa)
	GGTG_13935	Uncharacterized protein. (331 aa)
	GGTG_09117	Uncharacterized protein. (144 aa)
	GGTG_04524	Uncharacterized protein. (284 aa)
	GGTG_08520	TFIIS-type domain-containing protein. (86 aa)
	GGTG_04121	DNA-directed RNA polymerase I. (233 aa)
	GGTG_03847	Uncharacterized protein. (85 aa)
	GGTG_03642	DNA-directed RNA polymerase III subunit RPC6. (413 aa)
	GGTG_05818	DNA-directed RNA polymerase I and III subunit RPAC1. (373 aa)
	GGTG_06227	RNA_pol_L_2 domain-containing protein. (130 aa)
	GGTG_06290	Uncharacterized protein. (438 aa)
	GGTG_06291	Uncharacterized protein. (375 aa)
	GGTG_08186	Uncharacterized protein. (435 aa)
	GGTG_08820	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (155 aa)
	GGTG_08913	TFIIS central domain-containing protein. (966 aa)
	GGTG_09429	DNA-directed RNA polymerase I. (155 aa)
	GGTG_09578	DNA-directed RNA polymerase I and III polypeptide. (157 aa)
	GGTG_09646	RPOL4c domain-containing protein. (143 aa)
	GGTG_03442	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation. (545 aa)
	GGTG_03259	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (264 aa)
	GGTG_02922	SAP30_Sin3_bdg domain-containing protein. (219 aa)
	GGTG_02781	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (121 aa)

Your Current Organism:

Gaeumannomyces tritici

NCBI taxonomy Id: 644352
Other names: G. tritici R3-111a-1, Gaeumannomyces graminis var. tritici R3-111a-1, Gaeumannomyces tritici R3-111a-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GGTG_00958	GGTG_01448	J3NI75	J3NJL8	Transcription elongation factor S-II.	Uncharacterized protein.	0.985
GGTG_00958	GGTG_01607	J3NI75	J3NK25	Transcription elongation factor S-II.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.803
GGTG_00958	GGTG_01635	J3NI75	J3NK53	Transcription elongation factor S-II.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
GGTG_00958	GGTG_02781	J3NI75	J3NNC5	Transcription elongation factor S-II.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.443
GGTG_00958	GGTG_03259	J3NI75	J3NPQ2	Transcription elongation factor S-II.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.856
GGTG_00958	GGTG_03642	J3NI75	J3NQT6	Transcription elongation factor S-II.	DNA-directed RNA polymerase III subunit RPC6.	0.891
GGTG_00958	GGTG_03847	J3NI75	J3NRE3	Transcription elongation factor S-II.	Uncharacterized protein.	0.989
GGTG_00958	GGTG_04121	J3NI75	J3NS76	Transcription elongation factor S-II.	DNA-directed RNA polymerase I.	0.995
GGTG_00958	GGTG_05818	J3NI75	J3NX08	Transcription elongation factor S-II.	DNA-directed RNA polymerase I and III subunit RPAC1.	0.878
GGTG_00958	GGTG_06227	J3NI75	J3NY74	Transcription elongation factor S-II.	RNA_pol_L_2 domain-containing protein.	0.990
GGTG_00958	GGTG_08186	J3NI75	J3P3V1	Transcription elongation factor S-II.	Uncharacterized protein.	0.919
GGTG_00958	GGTG_08520	J3NI75	J8UHS3	Transcription elongation factor S-II.	TFIIS-type domain-containing protein.	0.443
GGTG_00958	GGTG_08820	J3NI75	J3P5N0	Transcription elongation factor S-II.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.986
GGTG_00958	GGTG_08913	J3NI75	J3P5X3	Transcription elongation factor S-II.	TFIIS central domain-containing protein.	0.795
GGTG_00958	GGTG_09117	J3NI75	J8TX90	Transcription elongation factor S-II.	Uncharacterized protein.	0.830
GGTG_00958	GGTG_09429	J3NI75	J3P7D6	Transcription elongation factor S-II.	DNA-directed RNA polymerase I.	0.989
GGTG_00958	GGTG_09578	J3NI75	J3P7T7	Transcription elongation factor S-II.	DNA-directed RNA polymerase I and III polypeptide.	0.955
GGTG_00958	GGTG_09646	J3NI75	J3P808	Transcription elongation factor S-II.	RPOL4c domain-containing protein.	0.990
GGTG_00958	GGTG_09702	J3NI75	J3P867	Transcription elongation factor S-II.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.836
GGTG_00958	GGTG_09739	J3NI75	J3P8A5	Transcription elongation factor S-II.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996